LINC01475

Summary

LINC01475 (long intergenic non-protein coding RNA 1475, HGNC:51113) is a long non-coding RNA gene on chromosome 10q24.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51113
Approved symbol	LINC01475
Name	long intergenic non-protein coding RNA 1475
Location	10q24.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000257582
Ensembl biotype	lncRNA
Entrez	101927324
RNAcentral	URS0000031F5F — lncRNA, 766 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 9 — 9 lncRNA

ENST00000548010, ENST00000552096, ENST00000795233, ENST00000795234, ENST00000795235, ENST00000795236, ENST00000795237, ENST00000795238, ENST00000795239

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000548010 — 6 exons

Exon	Start	End
ENSE00002338739	99528590	99528684
ENSE00002352154	99526350	99526466
ENSE00002390208	99526623	99526694
ENSE00004179715	99527806	99528121
ENSE00004179717	99523336	99523630
ENSE00004179719	99531012	99531254

Expression profiles

Bgee: expression breadth broad, 72 present calls, max score 91.56.

Top tissues by expression

72 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	91.56	gold quality
minor salivary gland	UBERON:0001830	77.93	gold quality
muscle layer of sigmoid colon	UBERON:0035805	77.66	gold quality
spleen	UBERON:0002106	75.42	gold quality
colon	UBERON:0001155	72.20	gold quality
intestine	UBERON:0000160	71.41	gold quality
small intestine Peyer’s patch	UBERON:0003454	71.35	gold quality
small intestine	UBERON:0002108	70.79	gold quality
transverse colon	UBERON:0001157	69.69	gold quality
smooth muscle tissue	UBERON:0001135	65.76	gold quality
anterior cingulate cortex	UBERON:0009835	65.23	gold quality
rectum	UBERON:0001052	64.80	gold quality
duodenum	UBERON:0002114	61.58	gold quality
mucosa of transverse colon	UBERON:0004991	60.97	gold quality
vermiform appendix	UBERON:0001154	60.77	gold quality
gall bladder	UBERON:0002110	60.77	gold quality
tonsil	UBERON:0002372	57.69	gold quality
prefrontal cortex	UBERON:0000451	57.33	gold quality
liver	UBERON:0002107	56.97	gold quality
right lobe of liver	UBERON:0001114	56.29	gold quality
monocyte	CL:0000576	56.04	gold quality
fundus of stomach	UBERON:0001160	55.82	gold quality
islet of Langerhans	UBERON:0000006	54.59	gold quality
pancreas	UBERON:0001264	54.12	gold quality
sural nerve	UBERON:0015488	53.80	silver quality
body of pancreas	UBERON:0001150	53.72	gold quality
adipose tissue	UBERON:0001013	53.52	gold quality
omental fat pad	UBERON:0010414	53.47	gold quality
blood	UBERON:0000178	53.42	gold quality
bone marrow	UBERON:0002371	52.74	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.60

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.