LINC01476

Summary

LINC01476 (long intergenic non-protein coding RNA 1476, HGNC:51117) is a long non-coding RNA gene on chromosome 17q22-q23.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51117
Approved symbol	LINC01476
Name	long intergenic non-protein coding RNA 1476
Location	17q22-q23.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000265313
Ensembl biotype	lncRNA
Entrez	101927728
RNAcentral	URS000075E0FB — lncRNA, 546 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 16 — 16 lncRNA

ENST00000577478, ENST00000584262, ENST00000585190, ENST00000654551, ENST00000660347, ENST00000665301, ENST00000665757, ENST00000670915, ENST00000671404, ENST00000702234, ENST00000702848, ENST00000717185, ENST00000771600, ENST00000771601, ENST00000771602, ENST00000771603

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000577478 — 7 exons

Exon	Start	End
ENSE00002708555	59502979	59503094
ENSE00002728210	59451974	59452103
ENSE00003832393	59449742	59449776
ENSE00003833358	59433654	59433765
ENSE00003835383	59434417	59434521
ENSE00003836171	59430670	59430920
ENSE00003863528	59526480	59526872

Expression profiles

Bgee: expression breadth ubiquitous, 113 present calls, max score 78.03.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0958 / max 14.3536, expressed in 30 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
167328	0.0744	26
167329	0.0214	15

Top tissues by expression

113 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
superior frontal gyrus	UBERON:0002661	78.03	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	77.55	gold quality
prefrontal cortex	UBERON:0000451	77.03	gold quality
frontal cortex	UBERON:0001870	75.10	gold quality
anterior cingulate cortex	UBERON:0009835	72.64	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	72.15	gold quality
right frontal lobe	UBERON:0002810	72.01	gold quality
Brodmann (1909) area 9	UBERON:0013540	71.13	gold quality
cerebral cortex	UBERON:0000956	70.60	gold quality
right hemisphere of cerebellum	UBERON:0014890	69.35	gold quality
temporal lobe	UBERON:0001871	67.01	gold quality
amygdala	UBERON:0001876	66.93	gold quality
skeletal muscle tissue	UBERON:0001134	61.52	gold quality
tonsil	UBERON:0002372	60.10	silver quality
brain	UBERON:0000955	59.75	gold quality
primary visual cortex	UBERON:0002436	58.33	gold quality
cortical plate	UBERON:0005343	58.18	silver quality
ventricular zone	UBERON:0003053	57.92	silver quality
hindlimb stylopod muscle	UBERON:0004252	57.16	gold quality
ganglionic eminence	UBERON:0004023	57.00	silver quality
cerebellar hemisphere	UBERON:0002245	56.01	gold quality
cerebellar cortex	UBERON:0002129	55.43	gold quality
cerebellum	UBERON:0002037	54.56	gold quality
muscle tissue	UBERON:0002385	54.54	gold quality
Ammon’s horn	UBERON:0001954	53.63	gold quality
calcaneal tendon	UBERON:0003701	51.64	silver quality
corpus callosum	UBERON:0002336	51.63	gold quality
blood	UBERON:0000178	50.03	gold quality
nucleus accumbens	UBERON:0001882	50.02	gold quality
cortex of kidney	UBERON:0001225	49.93	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.24

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.