LINC01477

Summary

LINC01477 (long intergenic non-protein coding RNA 1477, HGNC:51119) is a long non-coding RNA gene on chromosome 18q12.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51119
Approved symbol	LINC01477
Name	long intergenic non-protein coding RNA 1477
Location	18q12.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000261715
Ensembl biotype	lncRNA
Entrez	101927900
RNAcentral	URS000075AA8A — lncRNA, 1240 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000566101

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000566101 — 4 exons

Exon	Start	End
ENSE00002598133	40082652	40082772
ENSE00002613403	40099012	40099233
ENSE00002618262	40070359	40070419
ENSE00002623326	40066286	40067107

Expression profiles

Bgee: expression breadth broad, 14 present calls, max score 63.21.

Top tissues by expression

145 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	63.21	silver quality
endothelial cell	CL:0000115	57.46	gold quality
prefrontal cortex	UBERON:0000451	55.90	silver quality
myocardium	UBERON:0002349	55.65	gold quality
cartilage tissue	UBERON:0002418	55.01	gold quality
buccal mucosa cell	CL:0002336	54.18	gold quality
gingival epithelium	UBERON:0001949	53.64	gold quality
adult mammalian kidney	UBERON:0000082	53.37	gold quality
gingiva	UBERON:0001828	52.75	gold quality
upper leg skin	UBERON:0004262	52.05	silver quality
islet of Langerhans	UBERON:0000006	51.08	silver quality
tonsil	UBERON:0002372	49.37	gold quality
Brodmann (1909) area 46	UBERON:0006483	47.31	gold quality
mouth mucosa	UBERON:0003729	47.20	gold quality
blood	UBERON:0000178	47.04	gold quality
urinary bladder	UBERON:0001255	47.04	gold quality
heart	UBERON:0000948	46.23	gold quality
quadriceps femoris	UBERON:0001377	46.11	gold quality
vastus lateralis	UBERON:0001379	45.90	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	45.83	gold quality
pancreas	UBERON:0001264	45.60	silver quality
liver	UBERON:0002107	43.75	gold quality
skin of hip	UBERON:0001554	43.68	silver quality
placenta	UBERON:0001987	43.55	gold quality
primary visual cortex	UBERON:0002436	43.46	gold quality
skeletal muscle tissue	UBERON:0001134	42.80	gold quality
kidney	UBERON:0002113	42.74	gold quality
bone marrow	UBERON:0002371	42.70	gold quality
stomach	UBERON:0000945	42.59	gold quality
secondary oocyte	CL:0000655	42.57	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.63

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.