LINC01478

Summary

LINC01478 (long intergenic non-protein coding RNA 1478, HGNC:51121) is a long non-coding RNA gene on chromosome 18q12.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51121
Approved symbol	LINC01478
Name	long intergenic non-protein coding RNA 1478
Location	18q12.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000267337
Ensembl biotype	lncRNA
Entrez	101927921
RNAcentral	URS000075E509 — lncRNA, 2069 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 47 — 47 lncRNA

ENST00000587877, ENST00000591487, ENST00000653402, ENST00000653780, ENST00000654586, ENST00000656465, ENST00000656528, ENST00000657927, ENST00000659414, ENST00000659598, ENST00000659766, ENST00000660684, ENST00000660866, ENST00000661590, ENST00000662019, ENST00000663353, ENST00000663869, ENST00000664337, ENST00000664723, ENST00000664969, ENST00000665202, ENST00000666277, ENST00000666688, ENST00000667772, ENST00000667873, ENST00000667908, ENST00000668470, ENST00000669315, ENST00000669871, ENST00000670168, ENST00000670858, ENST00000773127, ENST00000773128, ENST00000773129, ENST00000773130, ENST00000773131, ENST00000773132, ENST00000773133, ENST00000773134, ENST00000773135, ENST00000773136, ENST00000773137, ENST00000773138, ENST00000773139, ENST00000773140, ENST00000773141, ENST00000773142

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000587877 — 5 exons

Exon	Start	End
ENSE00002789820	44531456	44531707
ENSE00002807879	44323436	44324604
ENSE00002838347	44518225	44518368
ENSE00002842753	44325152	44325428
ENSE00002958128	44326247	44326482

Expression profiles

Bgee: expression breadth broad, 79 present calls, max score 91.47.

Top tissues by expression

79 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	91.47	gold quality
left testis	UBERON:0004533	76.10	gold quality
testis	UBERON:0000473	75.98	gold quality
right testis	UBERON:0004534	74.91	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	74.41	gold quality
bone marrow cell	CL:0002092	65.97	silver quality
sural nerve	UBERON:0015488	62.26	silver quality
ventricular zone	UBERON:0003053	61.81	gold quality
bone marrow	UBERON:0002371	60.66	gold quality
adrenal tissue	UBERON:0018303	56.75	gold quality
multicellular organism	UBERON:0000468	55.86	gold quality
monocyte	CL:0000576	54.41	gold quality
stomach	UBERON:0000945	52.55	gold quality
superior frontal gyrus	UBERON:0002661	52.02	gold quality
lymph node	UBERON:0000029	52.01	gold quality
gastrocnemius	UBERON:0001388	51.31	gold quality
prefrontal cortex	UBERON:0000451	50.45	gold quality
blood	UBERON:0000178	49.51	silver quality
tibial nerve	UBERON:0001323	49.24	gold quality
myometrium	UBERON:0001296	48.78	gold quality
skin of leg	UBERON:0001511	47.97	gold quality
vermiform appendix	UBERON:0001154	47.15	gold quality
urinary bladder	UBERON:0001255	46.81	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	46.55	gold quality
tonsil	UBERON:0002372	46.20	gold quality
right hemisphere of cerebellum	UBERON:0014890	45.59	gold quality
endometrium	UBERON:0001295	45.51	gold quality
placenta	UBERON:0001987	45.45	silver quality
primary visual cortex	UBERON:0002436	45.40	silver quality
islet of Langerhans	UBERON:0000006	45.17	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.10

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.