LINC01484

Summary

LINC01484 (long intergenic non-protein coding RNA 1484, HGNC:51136) is a long non-coding RNA gene on chromosome 5q35.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51136
Approved symbol	LINC01484
Name	long intergenic non-protein coding RNA 1484
Location	5q35.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000253686
Ensembl biotype	lncRNA
Entrez	101928136
RNAcentral	URS000075AC6C — lncRNA, 570 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 13 — 13 lncRNA

ENST00000517733, ENST00000518902, ENST00000521128, ENST00000654172, ENST00000664033, ENST00000665162, ENST00000668825, ENST00000669001, ENST00000669486, ENST00000732257, ENST00000732258, ENST00000732259, ENST00000732260

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000517733 — 3 exons

Exon	Start	End
ENSE00002100545	173711846	173711948
ENSE00002121426	173746020	173746209
ENSE00002130780	173707614	173707875

Expression profiles

Bgee: expression breadth ubiquitous, 123 present calls, max score 79.11.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2406 / max 57.1322, expressed in 63 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
64966	0.1587	35
64967	0.0819	27

Top tissues by expression

123 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
bone marrow cell	CL:0002092	79.11	gold quality
body of pancreas	UBERON:0001150	76.80	gold quality
sural nerve	UBERON:0015488	76.23	gold quality
right lobe of liver	UBERON:0001114	75.84	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	73.80	gold quality
right uterine tube	UBERON:0001302	73.64	gold quality
pancreas	UBERON:0001264	72.71	gold quality
liver	UBERON:0002107	71.60	gold quality
lymph node	UBERON:0000029	67.37	gold quality
tonsil	UBERON:0002372	67.34	gold quality
subcutaneous adipose tissue	UBERON:0002190	66.87	gold quality
metanephros cortex	UBERON:0010533	66.31	gold quality
islet of Langerhans	UBERON:0000006	64.92	gold quality
thoracic mammary gland	UBERON:0005200	64.47	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	63.94	gold quality
colonic epithelium	UBERON:0000397	63.93	silver quality
adipose tissue	UBERON:0001013	63.90	gold quality
cortex of kidney	UBERON:0001225	63.21	gold quality
cortical plate	UBERON:0005343	62.64	gold quality
right lung	UBERON:0002167	62.49	gold quality
vermiform appendix	UBERON:0001154	62.47	gold quality
gall bladder	UBERON:0002110	61.98	gold quality
left adrenal gland cortex	UBERON:0035825	61.60	gold quality
kidney	UBERON:0002113	61.44	gold quality
adult mammalian kidney	UBERON:0000082	61.29	gold quality
superior frontal gyrus	UBERON:0002661	60.44	gold quality
prefrontal cortex	UBERON:0000451	60.31	gold quality
frontal cortex	UBERON:0001870	59.87	gold quality
spleen	UBERON:0002106	59.86	gold quality
omental fat pad	UBERON:0010414	59.70	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.87

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.