LINC01486

Summary

LINC01486 (long intergenic non-protein coding RNA 1486, HGNC:51137) is a long non-coding RNA gene on chromosome 12q24.11.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51137
Approved symbol	LINC01486
Name	long intergenic non-protein coding RNA 1486
Location	12q24.11
Locus type	RNA, long non-coding
Status	Approved
Aliases	TCONS_00021407
Ensembl gene	ENSG00000256560
Ensembl biotype	lncRNA
Entrez	101928138
RNAcentral	URS000075EE6F — lncRNA, 612 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000538041, ENST00000724587, ENST00000724588

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000538041 — 3 exons

Exon	Start	End
ENSE00002251165	109357132	109357266
ENSE00002279371	109354083	109354435
ENSE00004047416	109359261	109359507

Expression profiles

Bgee: expression breadth broad, 58 present calls, max score 79.82.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0153 / max 11.2771, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
133190	0.0153	3

Top tissues by expression

58 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
left testis	UBERON:0004533	79.82	gold quality
testis	UBERON:0000473	79.34	gold quality
right testis	UBERON:0004534	78.43	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	77.42	silver quality
multicellular organism	UBERON:0000468	63.76	gold quality
ganglionic eminence	UBERON:0004023	61.94	gold quality
hindlimb stylopod muscle	UBERON:0004252	58.72	gold quality
liver	UBERON:0002107	55.04	silver quality
calcaneal tendon	UBERON:0003701	54.17	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	53.78	gold quality
tibial nerve	UBERON:0001323	51.86	gold quality
primary visual cortex	UBERON:0002436	51.50	silver quality
blood	UBERON:0000178	51.45	gold quality
leukocyte	CL:0000738	51.24	silver quality
monocyte	CL:0000576	50.72	silver quality
adult mammalian kidney	UBERON:0000082	50.40	gold quality
muscle of leg	UBERON:0001383	48.41	gold quality
thoracic mammary gland	UBERON:0005200	47.13	gold quality
prefrontal cortex	UBERON:0000451	46.76	silver quality
gastrocnemius	UBERON:0001388	46.50	gold quality
heart	UBERON:0000948	45.19	silver quality
caudate nucleus	UBERON:0001873	44.40	gold quality
heart left ventricle	UBERON:0002084	44.24	silver quality
nucleus accumbens	UBERON:0001882	44.14	gold quality
lower esophagus muscularis layer	UBERON:0035833	43.73	silver quality
zone of skin	UBERON:0000014	42.74	silver quality
right adrenal gland cortex	UBERON:0035827	42.61	silver quality
esophagus	UBERON:0001043	42.52	silver quality
skin of abdomen	UBERON:0001416	42.51	silver quality
body of pancreas	UBERON:0001150	42.35	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.27

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.