LINC01487

Summary

LINC01487 (long intergenic non-protein coding RNA 1487, HGNC:51139) is a long non-coding RNA gene on chromosome 3q25.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51139
Approved symbol	LINC01487
Name	long intergenic non-protein coding RNA 1487
Location	3q25.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000241336
Ensembl biotype	lncRNA
Entrez	101928190
RNAcentral	URS00007E3E8A — lncRNA, 406 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 8 — 8 lncRNA

ENST00000462531, ENST00000490497, ENST00000655378, ENST00000658401, ENST00000665154, ENST00000669141, ENST00000737832, ENST00000737833

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000462531 — 2 exons

Exon	Start	End
ENSE00001854502	155240945	155241625
ENSE00001855863	155242901	155243124

Expression profiles

Bgee: expression breadth broad, 66 present calls, max score 89.61.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0157 / max 16.2391, expressed in 4 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
39394	0.0157	4

Top tissues by expression

172 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	89.61	gold quality
sperm	CL:0000019	82.61	gold quality
left testis	UBERON:0004533	80.62	gold quality
right testis	UBERON:0004534	79.47	gold quality
testis	UBERON:0000473	77.56	gold quality
colonic epithelium	UBERON:0000397	63.84	silver quality
hindlimb stylopod muscle	UBERON:0004252	61.41	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	58.03	gold quality
muscle of leg	UBERON:0001383	56.61	gold quality
gastrocnemius	UBERON:0001388	56.48	gold quality
monocyte	CL:0000576	56.40	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	49.06	gold quality
anterior cingulate cortex	UBERON:0009835	48.05	gold quality
tibial nerve	UBERON:0001323	47.15	gold quality
anatomical system	UBERON:0000467	46.23	gold quality
tibial artery	UBERON:0007610	46.07	gold quality
material anatomical entity	UBERON:0000465	45.93	gold quality
Brodmann (1909) area 9	UBERON:0013540	45.92	silver quality
multicellular organism	UBERON:0000468	45.86	gold quality
adult organism	UBERON:0007023	45.09	gold quality
left adrenal gland	UBERON:0001234	44.92	gold quality
ectocervix	UBERON:0012249	44.64	silver quality
adult mammalian kidney	UBERON:0000082	44.42	gold quality
putamen	UBERON:0001874	43.97	gold quality
aorta	UBERON:0000947	43.79	gold quality
body of pancreas	UBERON:0001150	43.78	silver quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
left adrenal gland cortex	UBERON:0035825	42.85	gold quality
adenohypophysis	UBERON:0002196	42.81	silver quality
muscle layer of sigmoid colon	UBERON:0035805	42.63	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.47

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.