LINC01488

Summary

LINC01488 (long intergenic non-protein coding RNA 1488, HGNC:51144) is a long non-coding RNA gene on chromosome 11q13.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51144
Approved symbol	LINC01488
Name	long intergenic non-protein coding RNA 1488
Location	11q13.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	CUPID1
Ensembl gene	ENSG00000285094
Ensembl biotype	lncRNA
OMIM	617696
Entrez	101928292
RNAcentral	URS00026A237C — lncRNA, 3092 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000642898, ENST00000644563, ENST00000717996, ENST00000717997, ENST00000717998

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000642898 — 7 exons

Exon	Start	End
ENSE00003816968	69487899	69488308
ENSE00003822873	69491657	69491799
ENSE00003823055	69485611	69485938
ENSE00004033857	69492101	69494952
ENSE00004033859	69486044	69486143
ENSE00004033860	69491313	69491441
ENSE00004033863	69490495	69491160

Expression profiles

Bgee: expression breadth broad, 51 present calls, max score 94.34.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1918 / max 9.1776, expressed in 90 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
115587	0.1918	90

Top tissues by expression

58 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
quadriceps femoris	UBERON:0001377	94.34	gold quality
cerebellar vermis	UBERON:0004720	94.15	gold quality
right lobe of liver	UBERON:0001114	77.07	gold quality
liver	UBERON:0002107	76.68	gold quality
colonic epithelium	UBERON:0000397	71.51	gold quality
prostate gland	UBERON:0002367	71.26	gold quality
bone marrow	UBERON:0002371	69.43	silver quality
pancreas	UBERON:0001264	66.79	silver quality
thymus	UBERON:0002370	65.09	silver quality
spinal cord	UBERON:0002240	64.05	silver quality
hindlimb stylopod muscle	UBERON:0004252	55.02	silver quality
kidney	UBERON:0002113	51.65	gold quality
lymph node	UBERON:0000029	51.08	silver quality
cortex of kidney	UBERON:0001225	50.34	gold quality
endometrium	UBERON:0001295	49.73	gold quality
multicellular organism	UBERON:0000468	49.30	gold quality
heart left ventricle	UBERON:0002084	48.99	gold quality
urinary bladder	UBERON:0001255	48.97	silver quality
prefrontal cortex	UBERON:0000451	47.93	silver quality
adult mammalian kidney	UBERON:0000082	47.85	silver quality
muscle of leg	UBERON:0001383	47.67	silver quality
heart	UBERON:0000948	47.54	gold quality
spleen	UBERON:0002106	46.86	silver quality
thoracic mammary gland	UBERON:0005200	46.74	gold quality
duodenum	UBERON:0002114	46.60	silver quality
gastrocnemius	UBERON:0001388	45.85	silver quality
smooth muscle tissue	UBERON:0001135	45.84	gold quality
tibial artery	UBERON:0007610	45.61	silver quality
intestine	UBERON:0000160	45.45	gold quality
adrenal gland	UBERON:0002369	45.45	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.13

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.