LINC01489

Summary

LINC01489 (long intergenic non-protein coding RNA 1489, HGNC:51145) is a long non-coding RNA gene on chromosome 12p12.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51145
Approved symbol	LINC01489
Name	long intergenic non-protein coding RNA 1489
Location	12p12.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000255727
Ensembl biotype	lncRNA
Entrez	101928340
RNAcentral	URS000055E35F — lncRNA, 605 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000542689, ENST00000775665

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000542689 — 4 exons

Exon	Start	End
ENSE00002273238	15005100	15005206
ENSE00002302936	15002935	15003035
ENSE00004142736	15006361	15006999
ENSE00004142737	15001767	15001906

Expression profiles

Bgee: expression breadth ubiquitous, 102 present calls, max score 86.59.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0253 / max 4.2084, expressed in 9 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
124476	0.0253	9

Top tissues by expression

102 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	86.59	silver quality
right uterine tube	UBERON:0001302	73.71	gold quality
skeletal muscle tissue	UBERON:0001134	73.04	gold quality
hindlimb stylopod muscle	UBERON:0004252	71.03	gold quality
left uterine tube	UBERON:0001303	67.35	gold quality
myometrium	UBERON:0001296	66.64	gold quality
smooth muscle tissue	UBERON:0001135	66.07	gold quality
fallopian tube	UBERON:0003889	64.47	gold quality
body of uterus	UBERON:0009853	63.87	gold quality
muscle of leg	UBERON:0001383	63.39	gold quality
gastrocnemius	UBERON:0001388	61.62	gold quality
monocyte	CL:0000576	57.44	gold quality
apex of heart	UBERON:0002098	57.10	gold quality
muscle layer of sigmoid colon	UBERON:0035805	55.57	gold quality
right adrenal gland cortex	UBERON:0035827	55.28	gold quality
left adrenal gland cortex	UBERON:0035825	55.17	gold quality
left adrenal gland	UBERON:0001234	54.37	gold quality
adrenal gland	UBERON:0002369	53.93	gold quality
endometrium	UBERON:0001295	53.24	gold quality
colon	UBERON:0001155	53.03	gold quality
right adrenal gland	UBERON:0001233	52.84	gold quality
intestine	UBERON:0000160	52.62	gold quality
right atrium auricular region	UBERON:0006631	52.46	gold quality
calcaneal tendon	UBERON:0003701	52.33	gold quality
placenta	UBERON:0001987	52.25	gold quality
heart left ventricle	UBERON:0002084	52.00	gold quality
heart	UBERON:0000948	51.92	gold quality
small intestine Peyer’s patch	UBERON:0003454	51.67	gold quality
small intestine	UBERON:0002108	51.62	gold quality
lymph node	UBERON:0000029	51.48	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.96

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.