LINC01490

Summary

LINC01490 (long intergenic non-protein coding RNA 1490, HGNC:51146) is a long non-coding RNA gene on chromosome 12q21.31.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51146
Approved symbol	LINC01490
Name	long intergenic non-protein coding RNA 1490
Location	12q21.31
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000257741
Ensembl biotype	lncRNA
Entrez	101928420
RNAcentral	URS0000759E6D — lncRNA, 1464 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 12 — 12 lncRNA

ENST00000548705, ENST00000551399, ENST00000653130, ENST00000653991, ENST00000655211, ENST00000656352, ENST00000658715, ENST00000663278, ENST00000664923, ENST00000668136, ENST00000669331, ENST00000772311

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000548705 — 5 exons

Exon	Start	End
ENSE00002358428	80763154	80763214
ENSE00002376445	80769604	80769891
ENSE00002383179	80764222	80764324
ENSE00002397058	80763590	80763704
ENSE00002418973	80766750	80766820

Expression profiles

Bgee: expression breadth broad, 35 present calls, max score 87.12.

Top tissues by expression

160 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	87.12	gold quality
right testis	UBERON:0004534	67.14	gold quality
left testis	UBERON:0004533	65.63	gold quality
testis	UBERON:0000473	63.57	gold quality
buccal mucosa cell	CL:0002336	52.32	gold quality
monocyte	CL:0000576	50.80	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	47.73	gold quality
adult mammalian kidney	UBERON:0000082	46.69	gold quality
gastrocnemius	UBERON:0001388	46.14	gold quality
ascending aorta	UBERON:0001496	45.66	gold quality
thoracic aorta	UBERON:0001515	44.53	gold quality
tibial nerve	UBERON:0001323	44.43	gold quality
left adrenal gland	UBERON:0001234	43.90	silver quality
prefrontal cortex	UBERON:0000451	43.82	silver quality
anatomical system	UBERON:0000467	43.44	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
multicellular organism	UBERON:0000468	43.20	gold quality
material anatomical entity	UBERON:0000465	43.18	gold quality
body of pancreas	UBERON:0001150	43.04	silver quality
right lobe of thyroid gland	UBERON:0001119	42.90	gold quality
secondary oocyte	CL:0000655	42.57	gold quality
blood	UBERON:0000178	42.57	gold quality
left lobe of thyroid gland	UBERON:0001120	42.20	silver quality
kidney	UBERON:0002113	42.10	gold quality
aorta	UBERON:0000947	42.07	silver quality
omental fat pad	UBERON:0010414	41.90	silver quality
Brodmann (1909) area 9	UBERON:0013540	41.63	silver quality
oviduct epithelium	UBERON:0004804	41.48	gold quality
vastus lateralis	UBERON:0001379	41.41	gold quality
quadriceps femoris	UBERON:0001377	41.37	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.95

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.