LINC01493

Summary

LINC01493 (long intergenic non-protein coding RNA 1493, HGNC:51150) is a long non-coding RNA gene on chromosome 11p12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51150
Approved symbol	LINC01493
Name	long intergenic non-protein coding RNA 1493
Location	11p12
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000254562
Ensembl biotype	lncRNA
Entrez	101928536
RNAcentral	URS000075C037 — lncRNA, 506 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 19 — 19 lncRNA

ENST00000530102, ENST00000533575, ENST00000534756, ENST00000649890, ENST00000660482, ENST00000664652, ENST00000665044, ENST00000759813, ENST00000759814, ENST00000759815, ENST00000759816, ENST00000759817, ENST00000759818, ENST00000759819, ENST00000759820, ENST00000759821, ENST00000759822, ENST00000759823, ENST00000759824

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000530102 — 3 exons

Exon	Start	End
ENSE00002169219	38663862	38663983
ENSE00002173617	38648764	38648840
ENSE00002186438	38666597	38666857

Expression profiles

Bgee: expression breadth broad, 59 present calls, max score 89.45.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0076 / max 9.0217, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
113925	0.0076	3

Top tissues by expression

59 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	89.45	gold quality
sural nerve	UBERON:0015488	87.86	gold quality
left testis	UBERON:0004533	68.50	gold quality
testis	UBERON:0000473	68.43	gold quality
right testis	UBERON:0004534	67.14	gold quality
multicellular organism	UBERON:0000468	56.40	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	56.39	gold quality
right frontal lobe	UBERON:0002810	55.83	gold quality
monocyte	CL:0000576	54.53	gold quality
blood	UBERON:0000178	54.43	gold quality
adrenal tissue	UBERON:0018303	53.61	gold quality
calcaneal tendon	UBERON:0003701	52.42	silver quality
heart left ventricle	UBERON:0002084	48.65	gold quality
tibial artery	UBERON:0007610	47.78	gold quality
gastrocnemius	UBERON:0001388	47.31	gold quality
body of stomach	UBERON:0001161	46.73	gold quality
myometrium	UBERON:0001296	45.83	gold quality
amygdala	UBERON:0001876	45.63	gold quality
right atrium auricular region	UBERON:0006631	45.55	gold quality
stomach	UBERON:0000945	45.30	gold quality
putamen	UBERON:0001874	45.20	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	45.18	gold quality
ovary	UBERON:0000992	45.02	silver quality
left coronary artery	UBERON:0001626	44.46	gold quality
tibial nerve	UBERON:0001323	43.96	gold quality
anterior cingulate cortex	UBERON:0009835	43.30	silver quality
esophagus mucosa	UBERON:0002469	43.13	silver quality
body of pancreas	UBERON:0001150	42.56	silver quality
gall bladder	UBERON:0002110	42.44	silver quality
adenohypophysis	UBERON:0002196	42.40	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.53

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.