LINC01498

Summary

LINC01498 (long intergenic non-protein coding RNA 1498, HGNC:51164) is a long non-coding RNA gene on chromosome 12q23.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51164
Approved symbol	LINC01498
Name	long intergenic non-protein coding RNA 1498
Location	12q23.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000247213
Ensembl biotype	lncRNA
Entrez	102723562
RNAcentral	URS00002C663C — lncRNA, 549 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 7 — 6 lncRNA, 1 retained_intron

ENST00000502160, ENST00000551889, ENST00000670674, ENST00000732921, ENST00000732922, ENST00000732923, ENST00000732924

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000502160 — 18 exons

Exon	Start	End
ENSE00001960969	108443275	108443317
ENSE00001967420	108434130	108434293
ENSE00001968519	108459445	108459584
ENSE00001970759	108448386	108448496
ENSE00001973880	108461630	108461694
ENSE00001974880	108438800	108438899
ENSE00001974975	108448758	108448886
ENSE00001976198	108459181	108459303
ENSE00001977542	108473002	108473186
ENSE00001979236	108442549	108442699
ENSE00001979480	108472009	108472103
ENSE00001979542	108457796	108457932
ENSE00001980089	108486173	108486242
ENSE00001982432	108492450	108492585
ENSE00001983396	108464262	108464446
ENSE00001985062	108453751	108453831
ENSE00001991280	108447442	108447520
ENSE00001991441	108479539	108480528

Expression profiles

Bgee: expression breadth broad, 79 present calls, max score 77.15.

Top tissues by expression

79 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	77.15	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	65.91	gold quality
left testis	UBERON:0004533	65.47	gold quality
testis	UBERON:0000473	65.41	gold quality
right testis	UBERON:0004534	64.83	gold quality
bone marrow cell	CL:0002092	63.15	silver quality
bone marrow	UBERON:0002371	58.17	silver quality
skeletal muscle tissue	UBERON:0001134	57.98	silver quality
primary visual cortex	UBERON:0002436	54.87	gold quality
monocyte	CL:0000576	54.28	gold quality
right ovary	UBERON:0002118	53.09	gold quality
urinary bladder	UBERON:0001255	50.62	gold quality
blood	UBERON:0000178	50.24	silver quality
liver	UBERON:0002107	49.95	silver quality
prefrontal cortex	UBERON:0000451	49.80	silver quality
multicellular organism	UBERON:0000468	49.62	gold quality
islet of Langerhans	UBERON:0000006	49.22	gold quality
right lobe of liver	UBERON:0001114	48.69	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	47.81	gold quality
tibial artery	UBERON:0007610	47.46	gold quality
muscle of leg	UBERON:0001383	47.36	gold quality
lymph node	UBERON:0000029	47.21	silver quality
gastrocnemius	UBERON:0001388	47.05	gold quality
ovary	UBERON:0000992	46.70	gold quality
right adrenal gland cortex	UBERON:0035827	45.22	gold quality
lung	UBERON:0002048	44.97	gold quality
stomach	UBERON:0000945	44.00	gold quality
heart left ventricle	UBERON:0002084	44.00	silver quality
body of stomach	UBERON:0001161	43.97	gold quality
body of pancreas	UBERON:0001150	43.96	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.58

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.