LINC01499

Summary

LINC01499 (long intergenic non-protein coding RNA 1499, HGNC:51165) is a long non-coding RNA gene on chromosome 11p12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51165
Approved symbol	LINC01499
Name	long intergenic non-protein coding RNA 1499
Location	11p12
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000255171
Ensembl biotype	lncRNA
Entrez	102723644
RNAcentral	URS0000613DC8 — lncRNA, 553 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 13 — 13 lncRNA

ENST00000526179, ENST00000528720, ENST00000529282, ENST00000530379, ENST00000530946, ENST00000532199, ENST00000648000, ENST00000659522, ENST00000718493, ENST00000824245, ENST00000824246, ENST00000824247, ENST00000824248

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000526179 — 2 exons

Exon	Start	End
ENSE00002149011	41856346	41856554
ENSE00002173743	41875776	41875997

Expression profiles

Bgee: expression breadth ubiquitous, 115 present calls, max score 78.54.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0152 / max 12.6304, expressed in 4 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
113932	0.0152	4

Top tissues by expression

115 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	78.54	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	77.12	gold quality
muscle tissue	UBERON:0002385	69.97	gold quality
testis	UBERON:0000473	67.04	gold quality
left testis	UBERON:0004533	66.85	gold quality
right testis	UBERON:0004534	65.71	gold quality
corpus callosum	UBERON:0002336	62.10	gold quality
skeletal muscle tissue	UBERON:0001134	61.45	gold quality
lymph node	UBERON:0000029	61.23	gold quality
liver	UBERON:0002107	60.97	gold quality
right lobe of liver	UBERON:0001114	60.42	gold quality
adrenal tissue	UBERON:0018303	60.13	gold quality
calcaneal tendon	UBERON:0003701	59.39	gold quality
duodenum	UBERON:0002114	59.13	gold quality
placenta	UBERON:0001987	58.75	gold quality
bone marrow	UBERON:0002371	58.53	gold quality
stromal cell of endometrium	CL:0002255	57.06	gold quality
islet of Langerhans	UBERON:0000006	56.34	gold quality
monocyte	CL:0000576	55.95	gold quality
rectum	UBERON:0001052	55.92	gold quality
blood	UBERON:0000178	54.90	gold quality
prefrontal cortex	UBERON:0000451	54.67	gold quality
right adrenal gland cortex	UBERON:0035827	54.11	gold quality
vermiform appendix	UBERON:0001154	54.00	gold quality
muscle of leg	UBERON:0001383	53.63	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	53.61	gold quality
stomach	UBERON:0000945	53.38	gold quality
right adrenal gland	UBERON:0001233	52.98	gold quality
ascending aorta	UBERON:0001496	52.93	gold quality
thoracic aorta	UBERON:0001515	52.79	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.74

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.