LINC01500

Summary

LINC01500 (long intergenic non-protein coding RNA 1500, HGNC:51166) is a long non-coding RNA gene on chromosome 14q23.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51166
Approved symbol	LINC01500
Name	long intergenic non-protein coding RNA 1500
Location	14q23.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000258583
Ensembl biotype	lncRNA
Entrez	102723742
RNAcentral	URS00002E7567 — lncRNA, 752 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 39 — 39 lncRNA

ENST00000553762, ENST00000555378, ENST00000556026, ENST00000556815, ENST00000648996, ENST00000654440, ENST00000654847, ENST00000655076, ENST00000655931, ENST00000656663, ENST00000657369, ENST00000658062, ENST00000658421, ENST00000658696, ENST00000658808, ENST00000659176, ENST00000659718, ENST00000660465, ENST00000660792, ENST00000661873, ENST00000662599, ENST00000662717, ENST00000663442, ENST00000663641, ENST00000665985, ENST00000666714, ENST00000666814, ENST00000667158, ENST00000667162, ENST00000669795, ENST00000776559, ENST00000776560, ENST00000776561, ENST00000776562, ENST00000776563, ENST00000776564, ENST00000776565, ENST00000776566, ENST00000776567

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000553762 — 9 exons

Exon	Start	End
ENSE00002438065	58828288	58828555
ENSE00002448318	58888798	58888922
ENSE00002484578	58894143	58894331
ENSE00002499613	58948313	58948341
ENSE00002505245	58890324	58890520
ENSE00002510332	58910263	58910342
ENSE00002527032	59009031	59009150
ENSE00003853082	59017263	59017324
ENSE00003864841	58877609	58877692

Expression profiles

Bgee: expression breadth ubiquitous, 137 present calls, max score 80.48.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0389 / max 15.6024, expressed in 12 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
139838	0.0259	6
139837	0.0130	4

Top tissues by expression

235 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.48	gold quality
sperm	CL:0000019	79.97	gold quality
left testis	UBERON:0004533	75.71	gold quality
right testis	UBERON:0004534	75.21	gold quality
testis	UBERON:0000473	73.20	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	68.81	gold quality
bone marrow cell	CL:0002092	66.32	silver quality
sural nerve	UBERON:0015488	65.54	gold quality
cortical plate	UBERON:0005343	63.50	gold quality
ventricular zone	UBERON:0003053	58.08	silver quality
ganglionic eminence	UBERON:0004023	57.85	gold quality
prefrontal cortex	UBERON:0000451	56.68	gold quality
leukocyte	CL:0000738	56.10	gold quality
monocyte	CL:0000576	55.87	gold quality
vermiform appendix	UBERON:0001154	55.81	gold quality
cardiac muscle of right atrium	UBERON:0003379	54.34	gold quality
left ventricle myocardium	UBERON:0006566	54.23	gold quality
calcaneal tendon	UBERON:0003701	54.22	gold quality
adrenal tissue	UBERON:0018303	53.97	gold quality
kidney epithelium	UBERON:0004819	53.93	gold quality
buccal mucosa cell	CL:0002336	53.80	gold quality
upper arm skin	UBERON:0004263	53.52	gold quality
epithelial cell of pancreas	CL:0000083	53.43	gold quality
tibialis anterior	UBERON:0001385	53.41	silver quality
deltoid	UBERON:0001476	53.26	gold quality
muscle of leg	UBERON:0001383	50.48	gold quality
tibial nerve	UBERON:0001323	50.38	gold quality
pancreas	UBERON:0001264	50.29	gold quality
myocardium	UBERON:0002349	50.25	gold quality
smooth muscle tissue	UBERON:0001135	50.03	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.05

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.