LINC01501

Summary

LINC01501 (long intergenic non-protein coding RNA 1501, HGNC:27988) is a long non-coding RNA gene on chromosome 9q22.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27988
Approved symbol	LINC01501
Name	long intergenic non-protein coding RNA 1501
Location	9q22.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000229613
Ensembl biotype	lncRNA
Entrez	340515
RNAcentral	URS000075B5F1 — lncRNA, 2041 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 29 — 29 lncRNA

ENST00000427523, ENST00000429044, ENST00000449990, ENST00000655942, ENST00000656691, ENST00000658201, ENST00000664603, ENST00000665289, ENST00000665506, ENST00000665733, ENST00000666177, ENST00000666877, ENST00000667748, ENST00000668156, ENST00000668348, ENST00000703259, ENST00000785747, ENST00000785748, ENST00000785749, ENST00000785750, ENST00000785751, ENST00000785752, ENST00000785753, ENST00000785754, ENST00000785755, ENST00000785756, ENST00000785757, ENST00000785758, ENST00000785759

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000427523 — 2 exons

Exon	Start	End
ENSE00001706126	90466816	90466945
ENSE00001756170	90463524	90463802

Expression profiles

Bgee: expression breadth ubiquitous, 101 present calls, max score 84.42.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0419 / max 5.8367, expressed in 28 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
101337	0.0419	28

Top tissues by expression

101 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	84.42	gold quality
left testis	UBERON:0004533	76.53	gold quality
testis	UBERON:0000473	76.22	gold quality
right testis	UBERON:0004534	76.00	gold quality
tonsil	UBERON:0002372	71.67	gold quality
lymph node	UBERON:0000029	66.91	gold quality
cortical plate	UBERON:0005343	65.79	gold quality
hindlimb stylopod muscle	UBERON:0004252	63.60	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	60.46	gold quality
adrenal tissue	UBERON:0018303	59.50	gold quality
monocyte	CL:0000576	57.00	gold quality
vermiform appendix	UBERON:0001154	55.33	gold quality
prefrontal cortex	UBERON:0000451	55.11	gold quality
superior frontal gyrus	UBERON:0002661	52.37	gold quality
right adrenal gland cortex	UBERON:0035827	52.37	gold quality
adult mammalian kidney	UBERON:0000082	52.25	gold quality
blood	UBERON:0000178	52.05	gold quality
calcaneal tendon	UBERON:0003701	51.90	silver quality
kidney	UBERON:0002113	50.81	gold quality
placenta	UBERON:0001987	50.55	gold quality
frontal cortex	UBERON:0001870	50.45	gold quality
multicellular organism	UBERON:0000468	50.08	gold quality
islet of Langerhans	UBERON:0000006	50.07	gold quality
muscle of leg	UBERON:0001383	49.84	gold quality
myometrium	UBERON:0001296	49.77	gold quality
cortex of kidney	UBERON:0001225	49.67	gold quality
primary visual cortex	UBERON:0002436	49.36	gold quality
bone marrow	UBERON:0002371	49.18	silver quality
right lobe of liver	UBERON:0001114	48.86	gold quality
gastrocnemius	UBERON:0001388	48.73	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.93

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.