LINC01504

Summary

LINC01504 (long intergenic non-protein coding RNA 1504, HGNC:51185) is a long non-coding RNA gene on chromosome 9q21.13.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51185
Approved symbol	LINC01504
Name	long intergenic non-protein coding RNA 1504
Location	9q21.13
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000225434
Ensembl biotype	lncRNA
Entrez	100507540
RNAcentral	URS0000183E3A — lncRNA, 2078 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 88 — 88 lncRNA

ENST00000436054, ENST00000451152, ENST00000451596, ENST00000653572, ENST00000657951, ENST00000659727, ENST00000665957, ENST00000687569, ENST00000700869, ENST00000701611, ENST00000783354, ENST00000783355, ENST00000783356, ENST00000783357, ENST00000783358, ENST00000783359, ENST00000783360, ENST00000783361, ENST00000783362, ENST00000783363, ENST00000783364, ENST00000783365, ENST00000783366, ENST00000783367, ENST00000783368, ENST00000783369, ENST00000783370, ENST00000783371, ENST00000783372, ENST00000783373, ENST00000783374, ENST00000783375, ENST00000783376, ENST00000783377, ENST00000783378, ENST00000783379, ENST00000783380, ENST00000783381, ENST00000783382, ENST00000783383, ENST00000783384, ENST00000783385, ENST00000783386, ENST00000783387, ENST00000783388, ENST00000783389, ENST00000783390, ENST00000783391, ENST00000783392, ENST00000783393, ENST00000783394, ENST00000783395, ENST00000783396, ENST00000783397, ENST00000783398, ENST00000783399, ENST00000783400, ENST00000783401, ENST00000783402, ENST00000783403, ENST00000783404, ENST00000783405, ENST00000783406, ENST00000783407, ENST00000783408, ENST00000783409, ENST00000783410, ENST00000783411, ENST00000783412, ENST00000783413, ENST00000783414, ENST00000783415, ENST00000783416, ENST00000783417, ENST00000783418, ENST00000783419, ENST00000783420, ENST00000783421, ENST00000783422, ENST00000783423, ENST00000783424, ENST00000783425, ENST00000783426, ENST00000783427, ENST00000783428, ENST00000783429, ENST00000783430, ENST00000783431

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000436054 — 5 exons

Exon	Start	End
ENSE00001601548	72328664	72328721
ENSE00001716945	72314986	72315090
ENSE00001754405	72335392	72335497
ENSE00004157454	72341592	72343210
ENSE00004157461	72305426	72305625

Expression profiles

Bgee: expression breadth ubiquitous, 168 present calls, max score 90.09.

FANTOM5 (CAGE): breadth broad, TPM avg 1.7109 / max 60.4764, expressed in 461 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
96920	1.0295	381
96922	0.5909	171
96921	0.0905	43

Top tissues by expression

255 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
tibial nerve	UBERON:0001323	90.09	gold quality
monocyte	CL:0000576	86.98	gold quality
leukocyte	CL:0000738	86.44	gold quality
right ovary	UBERON:0002118	85.29	gold quality
left ovary	UBERON:0002119	85.25	gold quality
tibialis anterior	UBERON:0001385	83.31	silver quality
lower esophagus mucosa	UBERON:0035834	83.25	gold quality
granulocyte	CL:0000094	83.16	gold quality
calcaneal tendon	UBERON:0003701	83.13	gold quality
popliteal artery	UBERON:0002250	82.85	gold quality
tibial artery	UBERON:0007610	82.78	gold quality
adrenal tissue	UBERON:0018303	80.93	gold quality
right uterine tube	UBERON:0001302	80.37	gold quality
mucosa of stomach	UBERON:0001199	79.70	gold quality
mucosa of transverse colon	UBERON:0004991	79.02	gold quality
pancreatic ductal cell	CL:0002079	78.82	silver quality
bone marrow cell	CL:0002092	78.14	gold quality
aorta	UBERON:0000947	78.04	gold quality
omental fat pad	UBERON:0010414	78.03	gold quality
peritoneum	UBERON:0002358	77.97	gold quality
ovary	UBERON:0000992	77.90	gold quality
hindlimb stylopod muscle	UBERON:0004252	77.79	gold quality
right lobe of liver	UBERON:0001114	77.74	gold quality
ectocervix	UBERON:0012249	77.66	gold quality
kidney epithelium	UBERON:0004819	77.59	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	76.28	gold quality
ileal mucosa	UBERON:0000331	76.23	gold quality
upper lobe of left lung	UBERON:0008952	76.13	gold quality
left uterine tube	UBERON:0001303	76.07	gold quality
adipose tissue of abdominal region	UBERON:0007808	76.06	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	3.02

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.