LINC01505

Summary

LINC01505 (long intergenic non-protein coding RNA 1505, HGNC:51186) is a long non-coding RNA gene on chromosome 9q31.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51186
Approved symbol	LINC01505
Name	long intergenic non-protein coding RNA 1505
Location	9q31.2
Locus type	RNA, long non-coding
Status	Approved
Aliases	uc.266, RP11-308N19.1
Ensembl gene	ENSG00000234323
Ensembl biotype	lncRNA
Entrez	100996590
RNAcentral	URS000075E3BA — lncRNA, 2069 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 170 — 170 lncRNA

ENST00000411451, ENST00000425709, ENST00000435485, ENST00000444985, ENST00000636028, ENST00000637046, ENST00000637185, ENST00000653693, ENST00000655266, ENST00000655864, ENST00000656069, ENST00000656689, ENST00000658295, ENST00000658723, ENST00000659198, ENST00000659247, ENST00000663508, ENST00000663705, ENST00000664212, ENST00000664703, ENST00000664960, ENST00000665119, ENST00000665373, ENST00000665889, ENST00000665947, ENST00000666690, ENST00000667292, ENST00000668842, ENST00000668979, ENST00000670335, ENST00000685173, ENST00000685899, ENST00000686957, ENST00000687669, ENST00000688893, ENST00000689497, ENST00000690853, ENST00000691180, ENST00000692913, ENST00000693637, ENST00000700793, ENST00000701249, ENST00000701643, ENST00000701865, ENST00000788680, ENST00000788681, ENST00000788682, ENST00000788683, ENST00000788684, ENST00000788685, ENST00000788686, ENST00000788687, ENST00000788688, ENST00000788689, ENST00000788690, ENST00000788691, ENST00000788692, ENST00000788693, ENST00000788694, ENST00000788695, ENST00000788696, ENST00000788697, ENST00000788698, ENST00000788699, ENST00000788700, ENST00000788701, ENST00000788702, ENST00000788703, ENST00000788704, ENST00000788705, ENST00000788706, ENST00000788707, ENST00000788708, ENST00000788709, ENST00000788710, ENST00000788711, ENST00000788712, ENST00000788713, ENST00000788714, ENST00000788715, ENST00000788716, ENST00000788717, ENST00000788718, ENST00000788719, ENST00000788720, ENST00000788721, ENST00000788722, ENST00000788723, ENST00000788724, ENST00000788725, ENST00000788726, ENST00000788727, ENST00000788728, ENST00000788729, ENST00000788730, ENST00000788731, ENST00000788732, ENST00000788733, ENST00000788734, ENST00000788735, ENST00000788736, ENST00000788737, ENST00000788738, ENST00000788739, ENST00000788740, ENST00000788741, ENST00000788742, ENST00000788743, ENST00000788744, ENST00000788745, ENST00000788746, ENST00000788747, ENST00000788748, ENST00000788749, ENST00000788750, ENST00000788751, ENST00000788752, ENST00000788753, ENST00000788754, ENST00000788755, ENST00000788756, ENST00000788757, ENST00000788758, ENST00000788759, ENST00000788760, ENST00000788762, ENST00000788764, ENST00000788765, ENST00000788766, ENST00000788767, ENST00000788768, ENST00000788769, ENST00000788770, ENST00000788771, ENST00000788772, ENST00000788773, ENST00000788774, ENST00000788775, ENST00000788776, ENST00000788777, ENST00000788778, ENST00000788779, ENST00000788780, ENST00000788781, ENST00000788782, ENST00000788783, ENST00000788784, ENST00000788785, ENST00000788786, ENST00000788787, ENST00000788788, ENST00000788789, ENST00000788790, ENST00000788791, ENST00000788792, ENST00000788793, ENST00000788794, ENST00000788795, ENST00000788796, ENST00000788797, ENST00000788798, ENST00000788799, ENST00000788800, ENST00000793805, ENST00000793806, ENST00000793807, ENST00000793808, ENST00000793809, ENST00000793810, ENST00000796723

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000411451 — 6 exons

Exon	Start	End
ENSE00001603021	106664753	106664877
ENSE00001604376	106558472	106558583
ENSE00003900245	106672869	106672939
ENSE00003901954	106697808	106698144
ENSE00003902159	106702509	106702662
ENSE00004167537	106450815	106450888

Expression profiles

Bgee: expression breadth ubiquitous, 149 present calls, max score 82.10.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.7878 / max 69.0265, expressed in 163 samples.

FANTOM5 promoters (7 alternative TSS)

Promoter ID	TPM avg	Samples expressed
97859	0.4540	91
97858	0.1875	72
97863	0.0391	20
97860	0.0368	21
97855	0.0298	21
97864	0.0206	7
97854	0.0201	14

Top tissues by expression

232 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.10	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	78.29	gold quality
heart left ventricle	UBERON:0002084	75.19	gold quality
cardiac ventricle	UBERON:0002082	74.41	gold quality
apex of heart	UBERON:0002098	71.35	gold quality
sural nerve	UBERON:0015488	70.94	gold quality
hindlimb stylopod muscle	UBERON:0004252	69.92	gold quality
colonic epithelium	UBERON:0000397	68.89	silver quality
C1 segment of cervical spinal cord	UBERON:0006469	68.42	gold quality
heart	UBERON:0000948	68.03	gold quality
spinal cord	UBERON:0002240	65.87	gold quality
granulocyte	CL:0000094	65.34	gold quality
muscle of leg	UBERON:0001383	64.95	gold quality
ventricular zone	UBERON:0003053	64.44	gold quality
gastrocnemius	UBERON:0001388	63.75	gold quality
calcaneal tendon	UBERON:0003701	63.01	gold quality
cortical plate	UBERON:0005343	62.91	gold quality
muscle layer of sigmoid colon	UBERON:0035805	62.40	gold quality
right atrium auricular region	UBERON:0006631	62.24	gold quality
cardiac atrium	UBERON:0002081	61.67	gold quality
tibial nerve	UBERON:0001323	60.99	gold quality
hypothalamus	UBERON:0001898	59.03	gold quality
secondary oocyte	CL:0000655	58.78	gold quality
corpus callosum	UBERON:0002336	58.62	gold quality
ganglionic eminence	UBERON:0004023	58.42	gold quality
adrenal tissue	UBERON:0018303	58.05	gold quality
right hemisphere of cerebellum	UBERON:0014890	57.84	gold quality
putamen	UBERON:0001874	57.79	gold quality
leukocyte	CL:0000738	57.42	gold quality
substantia nigra	UBERON:0002038	57.40	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.52

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.