LINC01506

Summary

LINC01506 (long intergenic non-protein coding RNA 1506, HGNC:51187) is a long non-coding RNA gene on chromosome 9q21.11.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51187
Approved symbol	LINC01506
Name	long intergenic non-protein coding RNA 1506
Location	9q21.11
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000234506
Ensembl biotype	lncRNA
Entrez	101927015
RNAcentral	URS000075A012 — lncRNA, 365 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 31 — 31 lncRNA

ENST00000432148, ENST00000446290, ENST00000684833, ENST00000685894, ENST00000687163, ENST00000688347, ENST00000688757, ENST00000702438, ENST00000762443, ENST00000762444, ENST00000762445, ENST00000762446, ENST00000762447, ENST00000762448, ENST00000762449, ENST00000762450, ENST00000762451, ENST00000762452, ENST00000762453, ENST00000762454, ENST00000762455, ENST00000762456, ENST00000762457, ENST00000762458, ENST00000762459, ENST00000762460, ENST00000762461, ENST00000762462, ENST00000762463, ENST00000762464, ENST00000762465

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000432148 — 4 exons

Exon	Start	End
ENSE00001612297	68545717	68545836
ENSE00001668861	68545501	68545624
ENSE00001709227	68543541	68543603
ENSE00001712670	68545929	68546116

Expression profiles

Bgee: expression breadth ubiquitous, 118 present calls, max score 93.18.

FANTOM5 (CAGE): breadth broad, TPM avg 1.4665 / max 300.6736, expressed in 195 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
100794	1.0385	173
100795	0.2140	55
100796	0.2140	80

Top tissues by expression

118 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
leukocyte	CL:0000738	93.18	gold quality
monocyte	CL:0000576	93.13	gold quality
blood	UBERON:0000178	90.94	gold quality
granulocyte	CL:0000094	90.21	gold quality
hindlimb stylopod muscle	UBERON:0004252	85.99	gold quality
bone marrow	UBERON:0002371	84.02	gold quality
bone marrow cell	CL:0002092	83.64	gold quality
spleen	UBERON:0002106	81.27	gold quality
adult mammalian kidney	UBERON:0000082	76.54	gold quality
vermiform appendix	UBERON:0001154	75.04	gold quality
kidney	UBERON:0002113	73.35	gold quality
right lung	UBERON:0002167	69.03	gold quality
cortex of kidney	UBERON:0001225	68.94	gold quality
superior frontal gyrus	UBERON:0002661	68.82	gold quality
upper lobe of left lung	UBERON:0008952	66.35	gold quality
metanephros cortex	UBERON:0010533	66.19	gold quality
lung	UBERON:0002048	65.98	gold quality
liver	UBERON:0002107	65.86	gold quality
placenta	UBERON:0001987	65.78	gold quality
gall bladder	UBERON:0002110	65.41	gold quality
fallopian tube	UBERON:0003889	64.87	gold quality
sural nerve	UBERON:0015488	64.16	gold quality
omental fat pad	UBERON:0010414	64.10	gold quality
muscle tissue	UBERON:0002385	63.57	gold quality
right lobe of liver	UBERON:0001114	63.56	gold quality
duodenum	UBERON:0002114	63.37	gold quality
left uterine tube	UBERON:0001303	63.14	gold quality
endometrium	UBERON:0001295	63.05	gold quality
lymph node	UBERON:0000029	62.94	gold quality
descending thoracic aorta	UBERON:0002345	62.59	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.53

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.