LINC01507

Summary

LINC01507 (long intergenic non-protein coding RNA 1507, HGNC:51189) is a long non-coding RNA gene on chromosome 9q21.31.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51189
Approved symbol	LINC01507
Name	long intergenic non-protein coding RNA 1507
Location	9q21.31
Locus type	RNA, long non-coding
Status	Approved
Aliases	XLOC_000303
Ensembl gene	ENSG00000230945
Ensembl biotype	lncRNA
Entrez	101927477
RNAcentral	URS000075DC8C — lncRNA, 1027 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 17 — 17 lncRNA

ENST00000417801, ENST00000622930, ENST00000797724, ENST00000797725, ENST00000827543, ENST00000827544, ENST00000827545, ENST00000827546, ENST00000827547, ENST00000827548, ENST00000827549, ENST00000827550, ENST00000827551, ENST00000827552, ENST00000827553, ENST00000827554, ENST00000827555

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000417801 — 2 exons

Exon	Start	End
ENSE00001741385	80034301	80034555
ENSE00001781552	80030579	80030769

Expression profiles

Bgee: expression breadth broad, 94 present calls, max score 93.49.

Top tissues by expression

94 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	93.49	gold quality
adult mammalian kidney	UBERON:0000082	74.97	gold quality
kidney	UBERON:0002113	73.51	gold quality
cortex of kidney	UBERON:0001225	71.44	gold quality
cortical plate	UBERON:0005343	70.80	gold quality
gall bladder	UBERON:0002110	69.31	gold quality
ventricular zone	UBERON:0003053	68.50	gold quality
tonsil	UBERON:0002372	66.90	gold quality
hindlimb stylopod muscle	UBERON:0004252	66.36	gold quality
metanephros cortex	UBERON:0010533	66.35	gold quality
bone marrow cell	CL:0002092	64.86	silver quality
urinary bladder	UBERON:0001255	60.82	gold quality
prefrontal cortex	UBERON:0000451	60.69	gold quality
skeletal muscle tissue	UBERON:0001134	60.62	gold quality
bone marrow	UBERON:0002371	60.40	gold quality
liver	UBERON:0002107	59.92	gold quality
lymph node	UBERON:0000029	58.77	gold quality
monocyte	CL:0000576	57.77	gold quality
placenta	UBERON:0001987	57.55	gold quality
muscle of leg	UBERON:0001383	56.46	gold quality
islet of Langerhans	UBERON:0000006	56.28	gold quality
gastrocnemius	UBERON:0001388	55.85	gold quality
primary visual cortex	UBERON:0002436	55.08	gold quality
heart	UBERON:0000948	54.55	gold quality
corpus callosum	UBERON:0002336	54.37	gold quality
superior frontal gyrus	UBERON:0002661	54.05	gold quality
frontal cortex	UBERON:0001870	53.81	gold quality
right lobe of liver	UBERON:0001114	53.68	gold quality
pancreas	UBERON:0001264	52.96	gold quality
cerebral cortex	UBERON:0000956	51.99	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.15

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.