LINC01509

Summary

LINC01509 (long intergenic non-protein coding RNA 1509, HGNC:51193) is a long non-coding RNA gene on chromosome 9q31.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51193
Approved symbol	LINC01509
Name	long intergenic non-protein coding RNA 1509
Location	9q31.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000226825
Ensembl biotype	lncRNA
Entrez	101928720
RNAcentral	URS000075A7E4 — lncRNA, 960 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 7 — 7 lncRNA

ENST00000415302, ENST00000423523, ENST00000654319, ENST00000655513, ENST00000659615, ENST00000837951, ENST00000837952

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000415302 — 4 exons

Exon	Start	End
ENSE00001594232	107427240	107427335
ENSE00001612402	107428292	107428419
ENSE00003852525	107433295	107433378
ENSE00003855965	107430715	107430901

Expression profiles

Bgee: expression breadth ubiquitous, 108 present calls, max score 83.31.

Top tissues by expression

108 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	83.31	silver quality
bone marrow cell	CL:0002092	79.28	gold quality
left testis	UBERON:0004533	68.27	gold quality
testis	UBERON:0000473	67.81	gold quality
right testis	UBERON:0004534	66.70	gold quality
bone marrow	UBERON:0002371	65.19	gold quality
skeletal muscle tissue	UBERON:0001134	62.27	gold quality
cortex of kidney	UBERON:0001225	57.46	gold quality
duodenum	UBERON:0002114	57.33	gold quality
lower esophagus mucosa	UBERON:0035834	56.60	gold quality
leukocyte	CL:0000738	55.92	gold quality
prostate gland	UBERON:0002367	55.90	gold quality
endometrium	UBERON:0001295	55.78	gold quality
monocyte	CL:0000576	55.73	gold quality
placenta	UBERON:0001987	55.52	gold quality
calcaneal tendon	UBERON:0003701	55.30	gold quality
vermiform appendix	UBERON:0001154	55.04	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	54.31	gold quality
hindlimb stylopod muscle	UBERON:0004252	53.56	gold quality
prefrontal cortex	UBERON:0000451	52.86	gold quality
gall bladder	UBERON:0002110	52.32	gold quality
liver	UBERON:0002107	52.19	gold quality
islet of Langerhans	UBERON:0000006	51.93	gold quality
blood	UBERON:0000178	51.86	gold quality
muscle of leg	UBERON:0001383	51.78	gold quality
right coronary artery	UBERON:0001625	50.73	gold quality
gastrocnemius	UBERON:0001388	50.64	gold quality
myometrium	UBERON:0001296	50.60	gold quality
skin of abdomen	UBERON:0001416	50.55	gold quality
popliteal artery	UBERON:0002250	50.28	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.81

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.