LINC01515

Summary

LINC01515 (long intergenic non-protein coding RNA 1515, HGNC:51210) is a long non-coding RNA gene on chromosome 10q21.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51210
Approved symbol	LINC01515
Name	long intergenic non-protein coding RNA 1515
Location	10q21.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000228065
Ensembl biotype	lncRNA
Entrez	101928913
RNAcentral	URS000075B7B8 — lncRNA, 679 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 93 — 93 lncRNA

ENST00000433152, ENST00000593568, ENST00000594054, ENST00000595269, ENST00000595737, ENST00000596743, ENST00000598092, ENST00000598902, ENST00000599409, ENST00000600848, ENST00000601389, ENST00000601888, ENST00000601926, ENST00000601979, ENST00000608678, ENST00000618687, ENST00000620859, ENST00000626101, ENST00000626907, ENST00000629716, ENST00000653705, ENST00000657227, ENST00000657308, ENST00000658125, ENST00000659135, ENST00000659321, ENST00000659387, ENST00000659814, ENST00000659962, ENST00000660014, ENST00000660324, ENST00000660825, ENST00000661052, ENST00000663281, ENST00000666619, ENST00000666706, ENST00000666779, ENST00000667597, ENST00000668041, ENST00000669518, ENST00000670657, ENST00000671025, ENST00000671055, ENST00000671182, ENST00000671334, ENST00000671392, ENST00000687019, ENST00000687614, ENST00000687841, ENST00000688061, ENST00000691099, ENST00000691510, ENST00000700881, ENST00000701289, ENST00000722060, ENST00000722061, ENST00000722062, ENST00000722063, ENST00000722064, ENST00000722065, ENST00000722066, ENST00000722067, ENST00000722068, ENST00000722069, ENST00000722070, ENST00000722071, ENST00000722072, ENST00000722073, ENST00000722074, ENST00000722075, ENST00000722076, ENST00000722077, ENST00000722078, ENST00000722079, ENST00000722080, ENST00000722081, ENST00000722082, ENST00000722083, ENST00000722084, ENST00000722085, ENST00000722086, ENST00000722087, ENST00000722088, ENST00000722089, ENST00000722090, ENST00000722091, ENST00000722092, ENST00000722093, ENST00000722094, ENST00000722095, ENST00000722096, ENST00000722097, ENST00000722098

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000433152 — 7 exons

Exon	Start	End
ENSE00001619586	65615636	65615761
ENSE00001712297	65680960	65681466
ENSE00001749602	65585665	65585802
ENSE00002761402	65572935	65573056
ENSE00002854376	65571425	65571579
ENSE00002924735	65570338	65570545
ENSE00002974323	65585485	65585567

Expression profiles

Bgee: expression breadth ubiquitous, 132 present calls, max score 87.78.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 4.3044 / max 74.8246, expressed in 1018 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
105200	3.8980	998
105201	0.4064	230

Top tissues by expression

132 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
adrenal tissue	UBERON:0018303	87.78	gold quality
ventricular zone	UBERON:0003053	86.11	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.73	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	85.41	gold quality
corpus callosum	UBERON:0002336	84.35	gold quality
colonic epithelium	UBERON:0000397	82.27	gold quality
sural nerve	UBERON:0015488	82.24	gold quality
calcaneal tendon	UBERON:0003701	80.55	gold quality
left ovary	UBERON:0002119	79.81	gold quality
ovary	UBERON:0000992	79.75	gold quality
ganglionic eminence	UBERON:0004023	79.32	gold quality
right ovary	UBERON:0002118	76.60	gold quality
endometrium	UBERON:0001295	75.85	gold quality
skin of abdomen	UBERON:0001416	75.46	gold quality
tonsil	UBERON:0002372	74.95	gold quality
right uterine tube	UBERON:0001302	74.91	gold quality
liver	UBERON:0002107	74.30	gold quality
zone of skin	UBERON:0000014	74.21	gold quality
rectum	UBERON:0001052	74.07	gold quality
muscle layer of sigmoid colon	UBERON:0035805	73.63	gold quality
kidney	UBERON:0002113	73.39	gold quality
skin of leg	UBERON:0001511	72.86	gold quality
bone marrow cell	CL:0002092	72.77	gold quality
colon	UBERON:0001155	72.75	gold quality
stromal cell of endometrium	CL:0002255	72.57	gold quality
mucosa of transverse colon	UBERON:0004991	72.29	gold quality
transverse colon	UBERON:0001157	71.49	gold quality
cortex of kidney	UBERON:0001225	71.30	gold quality
intestine	UBERON:0000160	71.21	gold quality
adult mammalian kidney	UBERON:0000082	70.84	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	3.63

Regulation

Is transcription factor: no

Literature-anchored findings (GeneRIF, showing 1)

• LINC01515 promotes nasopharyngeal carcinoma progression by serving as a sponge for miR-325 to up-regulate CDCA5. (PMID:33770322)

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.