LINC01516

Summary

LINC01516 (long intergenic non-protein coding RNA 1516, HGNC:51211) is a long non-coding RNA gene on chromosome 10p12.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51211
Approved symbol	LINC01516
Name	long intergenic non-protein coding RNA 1516
Location	10p12.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000231422
Ensembl biotype	lncRNA
Entrez	101929025
RNAcentral	URS000075A6D7 — lncRNA, 2977 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000436140, ENST00000808805, ENST00000808806

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000436140 — 7 exons

Exon	Start	End
ENSE00001724901	25116612	25116705
ENSE00001799467	25113058	25113686
ENSE00003515239	25125723	25125905
ENSE00003559628	25159651	25161236
ENSE00003606026	25126251	25126498
ENSE00003609244	25117292	25117413
ENSE00003681613	25158369	25158498

Expression profiles

Bgee: expression breadth broad, 15 present calls, max score 70.58.

Top tissues by expression

15 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
muscle tissue	UBERON:0002385	70.58	gold quality
liver	UBERON:0002107	66.08	silver quality
kidney	UBERON:0002113	58.90	silver quality
prefrontal cortex	UBERON:0000451	53.18	silver quality
cortex of kidney	UBERON:0001225	51.50	silver quality
gall bladder	UBERON:0002110	49.60	silver quality
cerebral cortex	UBERON:0000956	47.23	silver quality
blood	UBERON:0000178	45.97	gold quality
prostate gland	UBERON:0002367	43.54	silver quality
brain	UBERON:0000955	42.53	silver quality
anterior cingulate cortex	UBERON:0009835	42.30	silver quality
putamen	UBERON:0001874	40.80	silver quality
substantia nigra	UBERON:0002038	37.94	silver quality
hypothalamus	UBERON:0001898	36.90	silver quality
amygdala	UBERON:0001876	36.07	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.45

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.