LINC01517

Summary

LINC01517 (long intergenic non-protein coding RNA 1517, HGNC:51212) is a long non-coding RNA gene on chromosome 10p12.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51212
Approved symbol	LINC01517
Name	long intergenic non-protein coding RNA 1517
Location	10p12.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000232624
Ensembl biotype	lncRNA
Entrez	101929218
RNAcentral	URS000075EA8A — lncRNA, 619 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 79 — 78 lncRNA, 1 retained_intron

ENST00000375520, ENST00000426922, ENST00000456082, ENST00000603866, ENST00000611112, ENST00000614533, ENST00000616194, ENST00000621861, ENST00000643204, ENST00000644731, ENST00000645413, ENST00000646289, ENST00000647111, ENST00000653558, ENST00000655545, ENST00000659813, ENST00000660375, ENST00000665621, ENST00000722411, ENST00000722412, ENST00000722413, ENST00000722414, ENST00000722415, ENST00000722416, ENST00000722417, ENST00000722418, ENST00000722419, ENST00000722420, ENST00000722421, ENST00000722422, ENST00000722423, ENST00000722424, ENST00000722425, ENST00000722426, ENST00000722427, ENST00000722428, ENST00000722429, ENST00000722430, ENST00000722431, ENST00000722432, ENST00000722433, ENST00000722434, ENST00000722435, ENST00000722436, ENST00000722437, ENST00000722438, ENST00000722439, ENST00000722440, ENST00000722441, ENST00000722442, ENST00000722443, ENST00000722444, ENST00000722445, ENST00000722446, ENST00000722447, ENST00000722448, ENST00000722449, ENST00000722450, ENST00000722451, ENST00000722452, ENST00000722453, ENST00000722454, ENST00000722455, ENST00000722456, ENST00000722457, ENST00000722458, ENST00000722459, ENST00000722460, ENST00000722461, ENST00000722462, ENST00000722463, ENST00000722464, ENST00000722465, ENST00000722466, ENST00000722467, ENST00000722468, ENST00000754531, ENST00000754532, ENST00000754533

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000375520 — 5 exons

Exon	Start	End
ENSE00001467325	28880138	28881898
ENSE00001467328	28847119	28847263
ENSE00001467329	28846408	28846463
ENSE00003755416	28873256	28873291
ENSE00003756387	28848216	28848366

Expression profiles

Bgee: expression breadth ubiquitous, 118 present calls, max score 87.00.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0231 / max 25.2608, expressed in 3 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
104506	0.0182	3
104507	0.0049	3

Top tissues by expression

213 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
left testis	UBERON:0004533	87.00	gold quality
right testis	UBERON:0004534	86.92	gold quality
testis	UBERON:0000473	83.05	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.64	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	77.32	gold quality
colonic epithelium	UBERON:0000397	65.30	silver quality
adult mammalian kidney	UBERON:0000082	63.58	gold quality
monocyte	CL:0000576	63.11	gold quality
leukocyte	CL:0000738	62.96	gold quality
ganglionic eminence	UBERON:0004023	59.80	gold quality
ventricular zone	UBERON:0003053	59.16	silver quality
lower lobe of lung	UBERON:0008949	58.49	silver quality
body of pancreas	UBERON:0001150	58.33	gold quality
kidney	UBERON:0002113	58.10	gold quality
cortical plate	UBERON:0005343	56.82	silver quality
cortex of kidney	UBERON:0001225	56.32	gold quality
pancreas	UBERON:0001264	55.76	gold quality
hindlimb stylopod muscle	UBERON:0004252	55.62	gold quality
buccal mucosa cell	CL:0002336	55.10	silver quality
right lobe of liver	UBERON:0001114	54.68	gold quality
metanephros cortex	UBERON:0010533	54.18	gold quality
calcaneal tendon	UBERON:0003701	53.17	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	51.83	gold quality
islet of Langerhans	UBERON:0000006	51.06	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	50.13	gold quality
muscle of leg	UBERON:0001383	49.88	gold quality
blood	UBERON:0000178	49.41	gold quality
spinal cord	UBERON:0002240	49.15	gold quality
liver	UBERON:0002107	49.10	gold quality
right ovary	UBERON:0002118	49.07	gold quality

Single-cell (SCXA)

Detected in 2 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	6.82
E-CURD-119	no	4071.53

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.