LINC01521

Summary

LINC01521 (long intergenic non-protein coding RNA 1521, HGNC:26029) is a long non-coding RNA gene on chromosome 22q12.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:26029
Approved symbol	LINC01521
Name	long intergenic non-protein coding RNA 1521
Location	22q12.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000213888
Ensembl biotype	lncRNA
Entrez	54944
RNAcentral	URS000075C3AE — lncRNA, 4397 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000504184, ENST00000614284

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000504184 — 1 exons

Exon	Start	End
ENSE00004054145	31346745	31348719

Expression profiles

Bgee: expression breadth ubiquitous, 154 present calls, max score 79.43.

FANTOM5 (CAGE): breadth broad, TPM avg 2.1387 / max 23.4967, expressed in 741 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
191804	1.0519	417
191802	0.6796	397
191803	0.4072	240

Top tissues by expression

239 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	79.43	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	76.36	gold quality
prefrontal cortex	UBERON:0000451	71.70	gold quality
cortical plate	UBERON:0005343	70.24	gold quality
ventricular zone	UBERON:0003053	68.96	gold quality
bone marrow cell	CL:0002092	68.33	silver quality
ganglionic eminence	UBERON:0004023	68.16	gold quality
sural nerve	UBERON:0015488	67.56	gold quality
anterior cingulate cortex	UBERON:0009835	67.03	gold quality
stromal cell of endometrium	CL:0002255	66.58	gold quality
right frontal lobe	UBERON:0002810	65.92	gold quality
neocortex	UBERON:0001950	64.30	gold quality
frontal cortex	UBERON:0001870	64.17	gold quality
Brodmann (1909) area 9	UBERON:0013540	63.68	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	63.19	gold quality
amygdala	UBERON:0001876	63.04	gold quality
apex of heart	UBERON:0002098	62.70	gold quality
granulocyte	CL:0000094	62.58	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	61.99	gold quality
hindlimb stylopod muscle	UBERON:0004252	61.96	gold quality
spinal cord	UBERON:0002240	61.15	gold quality
right adrenal gland cortex	UBERON:0035827	60.97	gold quality
leukocyte	CL:0000738	60.93	gold quality
monocyte	CL:0000576	60.77	gold quality
right adrenal gland	UBERON:0001233	60.42	gold quality
muscle of leg	UBERON:0001383	60.42	gold quality
cerebral cortex	UBERON:0000956	60.24	gold quality
gastrocnemius	UBERON:0001388	59.91	gold quality
vermiform appendix	UBERON:0001154	59.88	gold quality
right hemisphere of cerebellum	UBERON:0014890	59.50	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.56

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.