LINC01522

Summary

LINC01522 (long intergenic non-protein coding RNA 1522, HGNC:51224) is a long non-coding RNA gene on chromosome 20q13.13.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51224
Approved symbol	LINC01522
Name	long intergenic non-protein coding RNA 1522
Location	20q13.13
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000237423
Ensembl biotype	lncRNA
Entrez	101927457
RNAcentral	URS000075B139 — lncRNA, 938 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 8 — 8 lncRNA

ENST00000428999, ENST00000655778, ENST00000669282, ENST00000671461, ENST00000673791, ENST00000837911, ENST00000837912, ENST00000837913

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000428999 — 2 exons

Exon	Start	End
ENSE00001654172	47988607	47988744
ENSE00001682651	47980488	47980778

Expression profiles

Bgee: expression breadth broad, 97 present calls, max score 79.76.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0565 / max 10.2413, expressed in 40 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
209154	0.0460	31
187671	0.0105	4

Top tissues by expression

97 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.76	silver quality
islet of Langerhans	UBERON:0000006	74.23	gold quality
left testis	UBERON:0004533	68.55	gold quality
testis	UBERON:0000473	68.44	gold quality
right testis	UBERON:0004534	67.57	gold quality
pituitary gland	UBERON:0000007	67.21	gold quality
pancreas	UBERON:0001264	64.58	gold quality
adenohypophysis	UBERON:0002196	60.47	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	57.23	gold quality
cortex of kidney	UBERON:0001225	56.74	gold quality
urinary bladder	UBERON:0001255	53.99	gold quality
monocyte	CL:0000576	53.66	silver quality
myometrium	UBERON:0001296	53.45	gold quality
brain	UBERON:0000955	52.99	gold quality
blood	UBERON:0000178	52.95	gold quality
prefrontal cortex	UBERON:0000451	52.85	silver quality
placenta	UBERON:0001987	52.79	gold quality
hypothalamus	UBERON:0001898	52.77	gold quality
smooth muscle tissue	UBERON:0001135	52.69	gold quality
multicellular organism	UBERON:0000468	52.62	gold quality
substantia nigra	UBERON:0002038	51.83	gold quality
gall bladder	UBERON:0002110	50.64	gold quality
fallopian tube	UBERON:0003889	50.06	gold quality
frontal cortex	UBERON:0001870	49.62	silver quality
muscle of leg	UBERON:0001383	49.51	gold quality
vermiform appendix	UBERON:0001154	49.49	gold quality
duodenum	UBERON:0002114	49.05	gold quality
gastrocnemius	UBERON:0001388	48.89	gold quality
left coronary artery	UBERON:0001626	48.56	gold quality
endocervix	UBERON:0000458	47.37	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.57

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.