LINC01523

Summary

LINC01523 (long intergenic non-protein coding RNA 1523, HGNC:51225) is a long non-coding RNA gene on chromosome 20q13.13.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51225
Approved symbol	LINC01523
Name	long intergenic non-protein coding RNA 1523
Location	20q13.13
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000229522
Ensembl biotype	lncRNA
Entrez	101060004
RNAcentral	URS000075E74C — lncRNA, 649 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 9 — 9 lncRNA

ENST00000425385, ENST00000838057, ENST00000838058, ENST00000838059, ENST00000838060, ENST00000838061, ENST00000838062, ENST00000838063, ENST00000838064

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000425385 — 2 exons

Exon	Start	End
ENSE00004259108	47983982	47984314
ENSE00004259112	47983193	47983521

Expression profiles

Bgee: expression breadth broad, 38 present calls, max score 98.68.

Top tissues by expression

166 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	98.68	gold quality
left testis	UBERON:0004533	74.01	gold quality
right testis	UBERON:0004534	73.97	gold quality
testis	UBERON:0000473	70.95	gold quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	67.06	gold quality
sperm	CL:0000019	65.60	silver quality
parotid gland	UBERON:0001831	63.23	gold quality
nasal cavity epithelium	UBERON:0005384	60.51	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	59.88	gold quality
biceps brachii	UBERON:0001507	59.61	gold quality
endothelial cell	CL:0000115	59.10	gold quality
trabecular bone tissue	UBERON:0002483	59.10	gold quality
buccal mucosa cell	CL:0002336	58.91	gold quality
skeletal muscle tissue	UBERON:0001134	58.51	gold quality
substantia nigra pars compacta	UBERON:0001965	58.20	gold quality
cerebellar vermis	UBERON:0004720	58.13	gold quality
lateral nuclear group of thalamus	UBERON:0002736	58.03	gold quality
bone marrow	UBERON:0002371	57.90	gold quality
cartilage tissue	UBERON:0002418	57.67	gold quality
saliva-secreting gland	UBERON:0001044	57.43	gold quality
secondary oocyte	CL:0000655	57.34	gold quality
mucosa of sigmoid colon	UBERON:0004993	57.10	gold quality
colonic mucosa	UBERON:0000317	57.00	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	56.72	gold quality
Brodmann (1909) area 23	UBERON:0013554	56.47	gold quality
primary visual cortex	UBERON:0002436	56.24	gold quality
substantia nigra pars reticulata	UBERON:0001966	55.91	gold quality
middle temporal gyrus	UBERON:0002771	55.83	gold quality
duodenum	UBERON:0002114	55.31	gold quality
myocardium	UBERON:0002349	55.07	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.55

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.