LINC01524

Summary

LINC01524 (long intergenic non-protein coding RNA 1524, HGNC:51228) is a long non-coding RNA gene on chromosome 20q13.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51228
Approved symbol	LINC01524
Name	long intergenic non-protein coding RNA 1524
Location	20q13.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000234948
Ensembl biotype	lncRNA
Entrez	101927700
RNAcentral	URS000075D0A5 — lncRNA, 4385 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 119 — 119 lncRNA

ENST00000413070, ENST00000421642, ENST00000422666, ENST00000425279, ENST00000428009, ENST00000437987, ENST00000448013, ENST00000454600, ENST00000653220, ENST00000653245, ENST00000653784, ENST00000654945, ENST00000655073, ENST00000655345, ENST00000655419, ENST00000655588, ENST00000655649, ENST00000655981, ENST00000656040, ENST00000656056, ENST00000656343, ENST00000656362, ENST00000656367, ENST00000656501, ENST00000657861, ENST00000658665, ENST00000659137, ENST00000659204, ENST00000660314, ENST00000660723, ENST00000661039, ENST00000661304, ENST00000661373, ENST00000661421, ENST00000661530, ENST00000661770, ENST00000661784, ENST00000662129, ENST00000662183, ENST00000662344, ENST00000662569, ENST00000662618, ENST00000663247, ENST00000663351, ENST00000663531, ENST00000663698, ENST00000663974, ENST00000664050, ENST00000665325, ENST00000665561, ENST00000665687, ENST00000666070, ENST00000666117, ENST00000666356, ENST00000666722, ENST00000666751, ENST00000667358, ENST00000667866, ENST00000668673, ENST00000668857, ENST00000669032, ENST00000669548, ENST00000669578, ENST00000669837, ENST00000670088, ENST00000716895, ENST00000716896, ENST00000765388, ENST00000765389, ENST00000765390, ENST00000765391, ENST00000765392, ENST00000765393, ENST00000765394, ENST00000765395, ENST00000765396, ENST00000765397, ENST00000765398, ENST00000765399, ENST00000765400, ENST00000765401, ENST00000765402, ENST00000765403, ENST00000765404, ENST00000765405, ENST00000765406, ENST00000765407, ENST00000765408, ENST00000765409, ENST00000765410, ENST00000765411, ENST00000765412, ENST00000765413, ENST00000765414, ENST00000765415, ENST00000765416, ENST00000765417, ENST00000765418, ENST00000765419, ENST00000765420, ENST00000765421, ENST00000765422, ENST00000765423, ENST00000765424, ENST00000765425, ENST00000765426, ENST00000765427, ENST00000765428, ENST00000765429, ENST00000765430, ENST00000765431, ENST00000765432, ENST00000765433, ENST00000765434, ENST00000765435, ENST00000765436, ENST00000765437, ENST00000765438, ENST00000765439

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000413070 — 5 exons

Exon	Start	End
ENSE00001641734	52677020	52677108
ENSE00001648482	52675210	52675310
ENSE00003881637	52671824	52671960
ENSE00003884677	52681405	52681582
ENSE00004031017	52674385	52674511

Expression profiles

Bgee: expression breadth ubiquitous, 113 present calls, max score 90.17.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2566 / max 37.8911, expressed in 63 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
185324	0.1145	48
185323	0.0835	37
185322	0.0585	28

Top tissues by expression

116 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	90.17	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	83.62	gold quality
testis	UBERON:0000473	76.02	gold quality
right testis	UBERON:0004534	75.57	gold quality
left testis	UBERON:0004533	74.77	gold quality
quadriceps femoris	UBERON:0001377	71.38	gold quality
bone marrow cell	CL:0002092	70.88	silver quality
cerebellar vermis	UBERON:0004720	67.22	gold quality
thymus	UBERON:0002370	66.63	silver quality
hindlimb stylopod muscle	UBERON:0004252	64.61	gold quality
cortex of kidney	UBERON:0001225	64.10	gold quality
sural nerve	UBERON:0015488	63.74	gold quality
muscle tissue	UBERON:0002385	61.76	gold quality
ganglionic eminence	UBERON:0004023	59.69	gold quality
skeletal muscle tissue	UBERON:0001134	59.60	gold quality
cortical plate	UBERON:0005343	57.19	gold quality
placenta	UBERON:0001987	54.94	gold quality
gall bladder	UBERON:0002110	54.52	gold quality
monocyte	CL:0000576	54.01	gold quality
blood	UBERON:0000178	53.08	gold quality
prefrontal cortex	UBERON:0000451	52.58	gold quality
liver	UBERON:0002107	52.54	gold quality
lymph node	UBERON:0000029	52.36	gold quality
thoracic mammary gland	UBERON:0005200	51.94	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	50.84	gold quality
adenohypophysis	UBERON:0002196	50.82	gold quality
right lobe of liver	UBERON:0001114	49.64	gold quality
pituitary gland	UBERON:0000007	49.51	gold quality
urinary bladder	UBERON:0001255	49.22	gold quality
myometrium	UBERON:0001296	48.95	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.58

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.