LINC01531

Summary

LINC01531 (long intergenic non-protein coding RNA 1531, HGNC:51270) is a long non-coding RNA gene on chromosome 19q13.12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51270
Approved symbol	LINC01531
Name	long intergenic non-protein coding RNA 1531
Location	19q13.12
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000205786
Ensembl biotype	lncRNA
Entrez	100128682
RNAcentral	URS0000097907 — lncRNA, 3312 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 10 — 10 lncRNA

ENST00000441942, ENST00000536898, ENST00000600405, ENST00000601669, ENST00000602468, ENST00000602653, ENST00000602796, ENST00000786434, ENST00000786435, ENST00000786436

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000441942 — 5 exons

Exon	Start	End
ENSE00001663718	35406585	35406697
ENSE00001698720	35408999	35409151
ENSE00001735495	35409286	35409493
ENSE00003087548	35401059	35401117
ENSE00003174946	35399548	35399657

Expression profiles

Bgee: expression breadth ubiquitous, 112 present calls, max score 78.67.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1073 / max 27.0243, expressed in 33 samples.

FANTOM5 promoters (7 alternative TSS)

Promoter ID	TPM avg	Samples expressed
175327	0.0386	15
175326	0.0277	10
175329	0.0161	6
175328	0.0087	3
175330	0.0074	5
175331	0.0052	3
208783	0.0037	2

Top tissues by expression

112 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sural nerve	UBERON:0015488	78.67	gold quality
bone marrow cell	CL:0002092	66.98	silver quality
colonic epithelium	UBERON:0000397	65.76	silver quality
blood	UBERON:0000178	65.07	gold quality
left testis	UBERON:0004533	64.78	gold quality
testis	UBERON:0000473	64.27	gold quality
ventricular zone	UBERON:0003053	63.69	gold quality
right testis	UBERON:0004534	63.13	gold quality
apex of heart	UBERON:0002098	63.09	gold quality
skeletal muscle tissue	UBERON:0001134	59.91	gold quality
bone marrow	UBERON:0002371	56.40	silver quality
duodenum	UBERON:0002114	56.26	gold quality
mucosa of transverse colon	UBERON:0004991	55.72	gold quality
ganglionic eminence	UBERON:0004023	55.15	silver quality
heart left ventricle	UBERON:0002084	53.54	gold quality
cortex of kidney	UBERON:0001225	53.47	gold quality
islet of Langerhans	UBERON:0000006	52.35	gold quality
vermiform appendix	UBERON:0001154	52.29	gold quality
heart	UBERON:0000948	52.05	gold quality
liver	UBERON:0002107	51.90	gold quality
monocyte	CL:0000576	51.70	silver quality
small intestine	UBERON:0002108	51.10	gold quality
small intestine Peyer’s patch	UBERON:0003454	50.70	gold quality
urinary bladder	UBERON:0001255	50.29	gold quality
right lobe of liver	UBERON:0001114	50.23	gold quality
lymph node	UBERON:0000029	49.62	silver quality
placenta	UBERON:0001987	49.60	gold quality
intestine	UBERON:0000160	49.47	gold quality
hindlimb stylopod muscle	UBERON:0004252	49.47	gold quality
calcaneal tendon	UBERON:0003701	49.43	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	5.56

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.