LINC01533

Summary

LINC01533 (long intergenic non-protein coding RNA 1533, HGNC:51274) is a long non-coding RNA gene on chromosome 19q13.11.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51274
Approved symbol	LINC01533
Name	long intergenic non-protein coding RNA 1533
Location	19q13.11
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000267779
Ensembl biotype	lncRNA
Entrez	100996665
RNAcentral	URS000075A5AA — lncRNA, 819 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 23 — 21 lncRNA, 2 retained_intron

ENST00000585739, ENST00000588694, ENST00000589110, ENST00000590719, ENST00000593056, ENST00000652115, ENST00000656139, ENST00000656347, ENST00000657008, ENST00000660670, ENST00000661915, ENST00000662070, ENST00000662548, ENST00000663104, ENST00000663477, ENST00000666300, ENST00000789609, ENST00000789613, ENST00000789614, ENST00000789615, ENST00000789616, ENST00000791647, ENST00000791648

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000585739 — 5 exons

Exon	Start	End
ENSE00002770793	32036990	32037095
ENSE00002863158	32025982	32026007
ENSE00002919670	32044833	32045056
ENSE00002947643	32048778	32048883
ENSE00002975275	32037554	32037707

Expression profiles

Bgee: expression breadth broad, 82 present calls, max score 82.17.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0064 / max 8.5706, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
175043	0.0064	3

Top tissues by expression

82 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sural nerve	UBERON:0015488	82.17	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	77.43	gold quality
skeletal muscle tissue	UBERON:0001134	77.20	gold quality
left testis	UBERON:0004533	75.33	gold quality
testis	UBERON:0000473	74.76	gold quality
right testis	UBERON:0004534	73.58	gold quality
liver	UBERON:0002107	59.71	silver quality
ventricular zone	UBERON:0003053	59.20	gold quality
uterine cervix	UBERON:0000002	59.01	gold quality
multicellular organism	UBERON:0000468	55.73	gold quality
monocyte	CL:0000576	54.99	gold quality
primary visual cortex	UBERON:0002436	54.86	gold quality
endometrium	UBERON:0001295	54.73	silver quality
muscle tissue	UBERON:0002385	54.22	gold quality
cortex of kidney	UBERON:0001225	53.38	gold quality
kidney	UBERON:0002113	51.51	silver quality
blood	UBERON:0000178	51.09	gold quality
prefrontal cortex	UBERON:0000451	49.02	gold quality
vagina	UBERON:0000996	48.72	gold quality
muscle of leg	UBERON:0001383	48.65	gold quality
superior frontal gyrus	UBERON:0002661	47.74	silver quality
lymph node	UBERON:0000029	47.58	silver quality
gastrocnemius	UBERON:0001388	47.34	gold quality
nucleus accumbens	UBERON:0001882	46.78	silver quality
body of pancreas	UBERON:0001150	45.77	gold quality
adrenal tissue	UBERON:0018303	45.71	silver quality
right lobe of liver	UBERON:0001114	45.39	silver quality
heart left ventricle	UBERON:0002084	45.31	silver quality
small intestine	UBERON:0002108	45.30	silver quality
islet of Langerhans	UBERON:0000006	45.23	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.41

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.