LINC01543

Summary

LINC01543 (long intergenic non-protein coding RNA 1543, HGNC:51310) is a long non-coding RNA gene on chromosome 18q11.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51310
Approved symbol	LINC01543
Name	long intergenic non-protein coding RNA 1543
Location	18q11.2
Locus type	RNA, long non-coding
Status	Approved
Aliases	TCONS_00026302
Ensembl gene	ENSG00000263862
Ensembl biotype	lncRNA
Entrez	100506787
RNAcentral	URS000075AB12 — lncRNA, 770 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000578367, ENST00000653430, ENST00000660990

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000578367 — 3 exons

Exon	Start	End
ENSE00002714370	26422995	26423319
ENSE00002720842	26425881	26426101
ENSE00002724295	26424948	26425301

Expression profiles

Bgee: expression breadth broad, 91 present calls, max score 84.48.

Top tissues by expression

97 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	84.48	silver quality
skeletal muscle tissue	UBERON:0001134	69.82	silver quality
thymus	UBERON:0002370	64.35	silver quality
quadriceps femoris	UBERON:0001377	64.14	gold quality
liver	UBERON:0002107	63.54	silver quality
spinal cord	UBERON:0002240	63.37	silver quality
cerebellar vermis	UBERON:0004720	63.05	gold quality
kidney	UBERON:0002113	61.79	gold quality
metanephros cortex	UBERON:0010533	61.78	gold quality
adult mammalian kidney	UBERON:0000082	60.38	gold quality
urinary bladder	UBERON:0001255	56.92	gold quality
cortex of kidney	UBERON:0001225	56.78	gold quality
lymph node	UBERON:0000029	54.04	gold quality
hindlimb stylopod muscle	UBERON:0004252	52.17	gold quality
monocyte	CL:0000576	52.16	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	51.34	gold quality
endocervix	UBERON:0000458	50.14	gold quality
tonsil	UBERON:0002372	49.10	gold quality
blood	UBERON:0000178	49.07	silver quality
vermiform appendix	UBERON:0001154	48.54	gold quality
duodenum	UBERON:0002114	48.45	silver quality
muscle of leg	UBERON:0001383	47.52	silver quality
gastrocnemius	UBERON:0001388	47.04	silver quality
fundus of stomach	UBERON:0001160	46.86	gold quality
prefrontal cortex	UBERON:0000451	46.70	silver quality
islet of Langerhans	UBERON:0000006	46.69	gold quality
left testis	UBERON:0004533	46.55	gold quality
testis	UBERON:0000473	46.54	gold quality
body of uterus	UBERON:0009853	45.44	gold quality
myometrium	UBERON:0001296	45.38	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.96

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.