LINC01544

Summary

LINC01544 (long intergenic non-protein coding RNA 1544, HGNC:51312) is a long non-coding RNA gene on chromosome 18q21.33.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51312
Approved symbol	LINC01544
Name	long intergenic non-protein coding RNA 1544
Location	18q21.33
Locus type	RNA, long non-coding
Status	Approved
Aliases	TCONS_00026194
Ensembl gene	ENSG00000260440
Ensembl biotype	lncRNA
Entrez	100996669
RNAcentral	URS000006BD7A — lncRNA, 3217 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000567801, ENST00000663426, ENST00000701089, ENST00000725848, ENST00000725849, ENST00000725850

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000567801 — 4 exons

Exon	Start	End
ENSE00002599752	61751786	61756646
ENSE00002603738	61751067	61751148
ENSE00002609192	61748721	61748820
ENSE00003888549	61748082	61748300

Expression profiles

Bgee: expression breadth broad, 61 present calls, max score 75.01.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0247 / max 13.2846, expressed in 5 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
170508	0.0247	5

Top tissues by expression

61 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
Brodmann (1909) area 9	UBERON:0013540	75.01	gold quality
right hemisphere of cerebellum	UBERON:0014890	73.51	gold quality
cerebellar cortex	UBERON:0002129	72.87	gold quality
cerebellum	UBERON:0002037	72.86	gold quality
cerebellar hemisphere	UBERON:0002245	72.86	gold quality
right frontal lobe	UBERON:0002810	68.88	gold quality
brain	UBERON:0000955	67.15	gold quality
hindlimb stylopod muscle	UBERON:0004252	65.67	gold quality
cortex of kidney	UBERON:0001225	64.25	gold quality
kidney	UBERON:0002113	60.78	gold quality
adult mammalian kidney	UBERON:0000082	59.86	gold quality
tonsil	UBERON:0002372	57.57	silver quality
blood	UBERON:0000178	55.96	silver quality
urinary bladder	UBERON:0001255	55.52	silver quality
metanephros cortex	UBERON:0010533	54.66	gold quality
multicellular organism	UBERON:0000468	54.16	gold quality
liver	UBERON:0002107	53.80	silver quality
corpus callosum	UBERON:0002336	53.35	gold quality
transverse colon	UBERON:0001157	52.92	gold quality
stromal cell of endometrium	CL:0002255	51.38	silver quality
Ammon’s horn	UBERON:0001954	48.23	gold quality
gall bladder	UBERON:0002110	47.46	gold quality
adrenal gland	UBERON:0002369	47.44	silver quality
nucleus accumbens	UBERON:0001882	46.87	gold quality
monocyte	CL:0000576	46.61	silver quality
endometrium	UBERON:0001295	46.45	silver quality
thoracic mammary gland	UBERON:0005200	46.32	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	45.80	silver quality
fundus of stomach	UBERON:0001160	45.74	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	45.64	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.44

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.