LINC01545

Summary

LINC01545 (long intergenic non-protein coding RNA 1545, HGNC:17986) is a long non-coding RNA gene on chromosome Xp11.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:17986
Approved symbol	LINC01545
Name	long intergenic non-protein coding RNA 1545
Location	Xp11.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	OTTHUMG00000021429
Ensembl gene	ENSG00000204904
Ensembl biotype	lncRNA
Entrez	724087
RNAcentral	URS000075BE30 — lncRNA, 556 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 12 — 12 lncRNA

ENST00000377879, ENST00000618037, ENST00000776850, ENST00000776851, ENST00000776852, ENST00000776853, ENST00000776854, ENST00000776855, ENST00000776856, ENST00000776857, ENST00000776858, ENST00000776859

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000377879 — 5 exons

Exon	Start	End
ENSE00001475400	46890293	46890379
ENSE00001475401	46894524	46894581
ENSE00004144947	46899604	46899709
ENSE00004144957	46912659	46912738
ENSE00004144966	46886869	46887692

Expression profiles

Bgee: expression breadth ubiquitous, 146 present calls, max score 84.92.

Top tissues by expression

236 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	84.92	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	83.78	gold quality
bone marrow cell	CL:0002092	69.81	silver quality
buccal mucosa cell	CL:0002336	68.91	silver quality
myocardium	UBERON:0002349	66.10	gold quality
heart left ventricle	UBERON:0002084	64.54	gold quality
cardiac ventricle	UBERON:0002082	64.15	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	63.33	gold quality
right adrenal gland cortex	UBERON:0035827	63.20	gold quality
stromal cell of endometrium	CL:0002255	62.97	gold quality
parotid gland	UBERON:0001831	61.73	gold quality
lateral nuclear group of thalamus	UBERON:0002736	61.49	gold quality
heart	UBERON:0000948	61.37	gold quality
right adrenal gland	UBERON:0001233	61.07	gold quality
islet of Langerhans	UBERON:0000006	60.81	gold quality
sural nerve	UBERON:0015488	59.69	silver quality
monocyte	CL:0000576	59.47	gold quality
apex of heart	UBERON:0002098	59.43	gold quality
right atrium auricular region	UBERON:0006631	58.94	gold quality
left adrenal gland	UBERON:0001234	58.84	gold quality
pancreas	UBERON:0001264	58.69	gold quality
cardiac atrium	UBERON:0002081	58.45	gold quality
right lobe of liver	UBERON:0001114	58.43	gold quality
adrenal tissue	UBERON:0018303	58.34	gold quality
left adrenal gland cortex	UBERON:0035825	58.34	gold quality
endothelial cell	CL:0000115	58.20	gold quality
vermiform appendix	UBERON:0001154	58.20	gold quality
body of pancreas	UBERON:0001150	58.16	gold quality
adrenal gland	UBERON:0002369	58.12	gold quality
adrenal cortex	UBERON:0001235	58.01	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.26

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.