LINC01547

Summary

LINC01547 (long intergenic non-protein coding RNA 1547, HGNC:15707) is a long non-coding RNA gene on chromosome 21q22.3.

Located in endoplasmic reticulum.

Source: NCBI Gene 84536 — RefSeq curated summary.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:15707
Approved symbol	LINC01547
Name	long intergenic non-protein coding RNA 1547
Location	21q22.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000183250
Ensembl biotype	lncRNA
Entrez	84536
RNAcentral	URS0000759A06 — lncRNA, 1850 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 14 — 14 lncRNA

ENST00000330551, ENST00000397841, ENST00000615847, ENST00000654166, ENST00000657006, ENST00000658179, ENST00000660377, ENST00000663249, ENST00000664358, ENST00000667826, ENST00000690957, ENST00000835332, ENST00000835333, ENST00000835334

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000330551 — 4 exons

Exon	Start	End
ENSE00001297690	44937539	44937682
ENSE00001318296	44935627	44935890
ENSE00001666910	44934725	44935096
ENSE00001927274	44939593	44939845

Expression profiles

Bgee: expression breadth ubiquitous, 155 present calls, max score 80.73.

FANTOM5 (CAGE): breadth broad, TPM avg 1.2744 / max 27.0833, expressed in 546 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
190811	1.2744	546

Top tissues by expression

240 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
monocyte	CL:0000576	80.73	gold quality
leukocyte	CL:0000738	80.13	gold quality
granulocyte	CL:0000094	75.67	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	74.53	silver quality
gingival epithelium	UBERON:0001949	71.70	gold quality
prefrontal cortex	UBERON:0000451	71.42	gold quality
lymph node	UBERON:0000029	71.25	gold quality
vermiform appendix	UBERON:0001154	70.99	gold quality
blood	UBERON:0000178	70.92	gold quality
sural nerve	UBERON:0015488	70.43	gold quality
anterior cingulate cortex	UBERON:0009835	70.20	gold quality
cortical plate	UBERON:0005343	69.97	gold quality
spleen	UBERON:0002106	69.93	gold quality
apex of heart	UBERON:0002098	69.35	gold quality
adenohypophysis	UBERON:0002196	69.06	gold quality
gingiva	UBERON:0001828	68.75	gold quality
amygdala	UBERON:0001876	68.73	gold quality
caecum	UBERON:0001153	68.63	gold quality
right lobe of liver	UBERON:0001114	68.28	gold quality
stromal cell of endometrium	CL:0002255	68.25	gold quality
right frontal lobe	UBERON:0002810	68.11	gold quality
ventricular zone	UBERON:0003053	68.05	gold quality
bone marrow cell	CL:0002092	67.74	silver quality
nasal cavity epithelium	UBERON:0005384	67.66	gold quality
neocortex	UBERON:0001950	67.59	gold quality
frontal cortex	UBERON:0001870	67.38	gold quality
ganglionic eminence	UBERON:0004023	66.99	gold quality
nucleus accumbens	UBERON:0001882	66.76	gold quality
pituitary gland	UBERON:0000007	66.63	gold quality
mouth mucosa	UBERON:0003729	66.46	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.04

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.