LINC01548

Summary

LINC01548 (long intergenic non-protein coding RNA 1548, HGNC:1296) is a long non-coding RNA gene on chromosome 21q22.11.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:1296
Approved symbol	LINC01548
Name	long intergenic non-protein coding RNA 1548
Location	21q22.11
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000229086
Ensembl biotype	lncRNA
Entrez	728409
RNAcentral	URS000075CA4D — lncRNA, 609 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 7 — 7 lncRNA

ENST00000451980, ENST00000637328, ENST00000796078, ENST00000796079, ENST00000796080, ENST00000796081, ENST00000796082

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000451980 — 5 exons

Exon	Start	End
ENSE00001626183	33169696	33169833
ENSE00001719305	33168443	33168581
ENSE00003793721	33170141	33170251
ENSE00004181354	33170564	33170672
ENSE00004181356	33164806	33165691

Expression profiles

Bgee: expression breadth broad, 51 present calls, max score 77.55.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0131 / max 10.8260, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
190224	0.0131	3

Top tissues by expression

51 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
left testis	UBERON:0004533	77.55	gold quality
testis	UBERON:0000473	77.14	gold quality
right testis	UBERON:0004534	76.96	gold quality
sural nerve	UBERON:0015488	62.03	gold quality
multicellular organism	UBERON:0000468	61.55	gold quality
urinary bladder	UBERON:0001255	58.57	gold quality
blood	UBERON:0000178	52.84	silver quality
temporal lobe	UBERON:0001871	52.15	silver quality
muscle of leg	UBERON:0001383	51.08	gold quality
gastrocnemius	UBERON:0001388	50.73	gold quality
monocyte	CL:0000576	49.50	silver quality
islet of Langerhans	UBERON:0000006	48.64	gold quality
tibial nerve	UBERON:0001323	48.41	gold quality
body of pancreas	UBERON:0001150	47.74	gold quality
ascending aorta	UBERON:0001496	45.41	gold quality
tibial artery	UBERON:0007610	45.37	gold quality
subcutaneous adipose tissue	UBERON:0002190	44.47	gold quality
vagina	UBERON:0000996	43.98	silver quality
small intestine	UBERON:0002108	43.31	silver quality
heart left ventricle	UBERON:0002084	43.12	gold quality
left lobe of thyroid gland	UBERON:0001120	42.64	silver quality
esophagus mucosa	UBERON:0002469	42.57	silver quality
skin of leg	UBERON:0001511	42.39	gold quality
prostate gland	UBERON:0002367	42.15	gold quality
small intestine Peyer’s patch	UBERON:0003454	42.11	silver quality
lower esophagus muscularis layer	UBERON:0035833	42.06	silver quality
intestine	UBERON:0000160	41.42	silver quality
skin of abdomen	UBERON:0001416	41.18	silver quality
esophagogastric junction muscularis propria	UBERON:0035841	41.18	silver quality
transverse colon	UBERON:0001157	40.74	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.87

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.