LINC01551

Summary

LINC01551 (long intergenic non-protein coding RNA 1551, HGNC:19828) is a long non-coding RNA gene on chromosome 14q12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:19828
Approved symbol	LINC01551
Name	long intergenic non-protein coding RNA 1551
Location	14q12
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000186960
Ensembl biotype	lncRNA
Entrez	387978
RNAcentral	URS000075E7AC — lncRNA, 3154 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 24 — 24 lncRNA

ENST00000399387, ENST00000548213, ENST00000550266, ENST00000552957, ENST00000622740, ENST00000653638, ENST00000661288, ENST00000668749, ENST00000671672, ENST00000675861, ENST00000689292, ENST00000787041, ENST00000787042, ENST00000787043, ENST00000787044, ENST00000787045, ENST00000787046, ENST00000787047, ENST00000787048, ENST00000787049, ENST00000787050, ENST00000787051, ENST00000787052, ENST00000787053

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000399387 — 3 exons

Exon	Start	End
ENSE00001339307	28791880	28793234
ENSE00003921402	28773360	28773433
ENSE00004164208	28771676	28772855

Expression profiles

Bgee: expression breadth ubiquitous, 129 present calls, max score 97.83.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 3.5867 / max 310.3598, expressed in 153 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
139086	3.5867	153

Top tissues by expression

132 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
ganglionic eminence	UBERON:0004023	97.83	gold quality
cortical plate	UBERON:0005343	96.59	gold quality
ventricular zone	UBERON:0003053	96.36	gold quality
colonic epithelium	UBERON:0000397	95.55	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	94.98	gold quality
putamen	UBERON:0001874	89.90	gold quality
bone marrow cell	CL:0002092	89.72	gold quality
caudate nucleus	UBERON:0001873	89.72	gold quality
nucleus accumbens	UBERON:0001882	89.15	gold quality
sural nerve	UBERON:0015488	85.30	gold quality
anterior cingulate cortex	UBERON:0009835	83.28	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	82.20	gold quality
Ammon’s horn	UBERON:0001954	81.94	gold quality
bone marrow	UBERON:0002371	81.92	gold quality
Brodmann (1909) area 9	UBERON:0013540	81.86	gold quality
cerebral cortex	UBERON:0000956	81.35	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	80.67	gold quality
amygdala	UBERON:0001876	80.55	gold quality
temporal lobe	UBERON:0001871	80.32	gold quality
right frontal lobe	UBERON:0002810	80.25	gold quality
superior frontal gyrus	UBERON:0002661	79.68	gold quality
frontal cortex	UBERON:0001870	79.36	gold quality
prefrontal cortex	UBERON:0000451	78.90	gold quality
testis	UBERON:0000473	78.28	gold quality
primary visual cortex	UBERON:0002436	77.99	gold quality
brain	UBERON:0000955	76.65	gold quality
left testis	UBERON:0004533	76.30	gold quality
muscle tissue	UBERON:0002385	75.94	gold quality
right testis	UBERON:0004534	75.57	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	75.03	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	5.36

Regulation

Is transcription factor: no

Literature-anchored findings (GeneRIF, showing 1)

• LINC01551 promotes metastasis of nasopharyngeal carcinoma through targeting microRNA-132-5p. (PMID:32329849)

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.