LINC01553

Summary

LINC01553 (long intergenic non-protein coding RNA 1553, HGNC:23524) is a long non-coding RNA gene on chromosome 10q21.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:23524
Approved symbol	LINC01553
Name	long intergenic non-protein coding RNA 1553
Location	10q21.2
Locus type	RNA, long non-coding
Status	Approved
Aliases	AC023904.2
Ensembl gene	ENSG00000235931
Ensembl biotype	lncRNA
Entrez	283025
RNAcentral	URS000075A6C1 — lncRNA, 1815 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000430888, ENST00000444900, ENST00000521074

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000430888 — 1 exons

Exon	Start	End
ENSE00001645525	59958285	59958671

Expression profiles

Bgee: expression breadth broad, 41 present calls, max score 86.22.

Top tissues by expression

159 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	86.22	gold quality
buccal mucosa cell	CL:0002336	76.61	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	74.78	gold quality
left testis	UBERON:0004533	72.42	gold quality
right testis	UBERON:0004534	70.79	gold quality
testis	UBERON:0000473	70.50	gold quality
gastrocnemius	UBERON:0001388	55.06	gold quality
monocyte	CL:0000576	49.90	silver quality
adult organism	UBERON:0007023	48.17	gold quality
tibial nerve	UBERON:0001323	48.15	gold quality
upper lobe of lung	UBERON:0008948	47.77	silver quality
body of pancreas	UBERON:0001150	45.54	silver quality
right lobe of liver	UBERON:0001114	45.47	silver quality
skin of leg	UBERON:0001511	44.76	gold quality
right frontal lobe	UBERON:0002810	44.73	gold quality
ectocervix	UBERON:0012249	44.68	silver quality
anatomical system	UBERON:0000467	44.65	gold quality
material anatomical entity	UBERON:0000465	44.46	gold quality
multicellular organism	UBERON:0000468	44.36	gold quality
body of stomach	UBERON:0001161	44.29	gold quality
heart left ventricle	UBERON:0002084	44.27	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	44.16	silver quality
lower esophagus muscularis layer	UBERON:0035833	43.99	gold quality
skin of abdomen	UBERON:0001416	43.66	silver quality
esophagogastric junction muscularis propria	UBERON:0035841	43.55	gold quality
adrenal tissue	UBERON:0018303	43.46	silver quality
body of uterus	UBERON:0009853	43.42	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
right atrium auricular region	UBERON:0006631	43.02	gold quality
cardiac ventricle	UBERON:0002082	42.95	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.41

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.