LINC01560

Summary

LINC01560 (long intergenic non-protein coding RNA 1560, HGNC:27333) is a long non-coding RNA gene on chromosome Xp11.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27333
Approved symbol	LINC01560
Name	long intergenic non-protein coding RNA 1560
Location	Xp11.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000196741
Ensembl biotype	lncRNA
Entrez	203414
RNAcentral	URS00007E3FA4 — lncRNA, 2528 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000357412

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000357412 — 1 exons

Exon	Start	End
ENSE00001421084	47483571	47484823

Expression profiles

Bgee: expression breadth ubiquitous, 207 present calls, max score 89.94.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 1.9451 / max 32.0460, expressed in 1185 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
196203	1.7406	1093
196204	0.2044	76

Top tissues by expression

239 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
buccal mucosa cell	CL:0002336	89.94	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	83.83	gold quality
ganglionic eminence	UBERON:0004023	82.08	gold quality
ileal mucosa	UBERON:0000331	81.65	gold quality
ventricular zone	UBERON:0003053	78.77	gold quality
cortical plate	UBERON:0005343	77.82	gold quality
gastrocnemius	UBERON:0001388	76.92	gold quality
muscle of leg	UBERON:0001383	76.89	gold quality
tibialis anterior	UBERON:0001385	75.35	silver quality
monocyte	CL:0000576	75.25	gold quality
leukocyte	CL:0000738	74.88	gold quality
rectum	UBERON:0001052	73.46	gold quality
body of uterus	UBERON:0009853	73.23	gold quality
smooth muscle tissue	UBERON:0001135	72.60	gold quality
islet of Langerhans	UBERON:0000006	72.52	gold quality
cerebellar hemisphere	UBERON:0002245	72.42	gold quality
hindlimb stylopod muscle	UBERON:0004252	72.41	gold quality
cerebellar cortex	UBERON:0002129	72.30	gold quality
mucosa of transverse colon	UBERON:0004991	72.25	gold quality
endocervix	UBERON:0000458	71.98	gold quality
right hemisphere of cerebellum	UBERON:0014890	71.62	gold quality
cerebellum	UBERON:0002037	71.56	gold quality
left ovary	UBERON:0002119	71.54	gold quality
descending thoracic aorta	UBERON:0002345	71.11	gold quality
secondary oocyte	CL:0000655	70.70	gold quality
ectocervix	UBERON:0012249	70.67	gold quality
popliteal artery	UBERON:0002250	70.64	gold quality
tibial artery	UBERON:0007610	70.64	gold quality
ovary	UBERON:0000992	70.52	gold quality
aorta	UBERON:0000947	70.27	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.32

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.