LINC01561

Summary

LINC01561 (long intergenic non-protein coding RNA 1561, HGNC:31365) is a long non-coding RNA gene on chromosome 10q26.12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:31365
Approved symbol	LINC01561
Name	long intergenic non-protein coding RNA 1561
Location	10q26.12
Locus type	RNA, long non-coding
Status	Approved
Aliases	FLJ37402, Em:AC023282.2
Ensembl gene	ENSG00000177234
Ensembl biotype	lncRNA
Entrez	404216
RNAcentral	URS000075EEEA — lncRNA, 2186 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000369071, ENST00000623529

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000369071 — 1 exons

Exon	Start	End
ENSE00001448747	120597949	120600124

Expression profiles

Bgee: expression breadth ubiquitous, 109 present calls, max score 75.85.

Top tissues by expression

199 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
tibialis anterior	UBERON:0001385	75.85	silver quality
right hemisphere of cerebellum	UBERON:0014890	75.77	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	75.44	gold quality
cerebellar cortex	UBERON:0002129	75.07	gold quality
cerebellar hemisphere	UBERON:0002245	75.04	gold quality
cerebellum	UBERON:0002037	74.94	gold quality
ileal mucosa	UBERON:0000331	73.40	gold quality
cerebellar vermis	UBERON:0004720	72.97	silver quality
hypothalamus	UBERON:0001898	72.79	gold quality
pons	UBERON:0000988	71.50	gold quality
medial globus pallidus	UBERON:0002477	71.34	silver quality
amygdala	UBERON:0001876	69.91	gold quality
Ammon’s horn	UBERON:0001954	69.23	gold quality
colonic epithelium	UBERON:0000397	69.00	gold quality
substantia nigra	UBERON:0002038	68.56	gold quality
globus pallidus	UBERON:0001875	68.05	silver quality
C1 segment of cervical spinal cord	UBERON:0006469	67.69	gold quality
midbrain	UBERON:0001891	67.58	gold quality
pancreatic ductal cell	CL:0002079	67.26	silver quality
spinal cord	UBERON:0002240	66.80	gold quality
anterior cingulate cortex	UBERON:0009835	65.83	gold quality
kidney epithelium	UBERON:0004819	64.94	gold quality
brain	UBERON:0000955	64.59	gold quality
temporal lobe	UBERON:0001871	64.58	gold quality
caudate nucleus	UBERON:0001873	64.07	gold quality
cortical plate	UBERON:0005343	63.87	gold quality
putamen	UBERON:0001874	63.55	gold quality
right frontal lobe	UBERON:0002810	63.31	gold quality
forebrain	UBERON:0001890	63.00	gold quality
nucleus accumbens	UBERON:0001882	62.85	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.64

Regulation

Is transcription factor: no

Literature-anchored findings (GeneRIF, showing 1)

• Long non-coding RNA linc01561 acts as ceRNA involved in the progression of breast cancer (PMID:29890225)

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.