LINC01562

Summary

LINC01562 (long intergenic non-protein coding RNA 1562, HGNC:51335) is a long non-coding RNA gene on chromosome 1p32.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51335
Approved symbol	LINC01562
Name	long intergenic non-protein coding RNA 1562
Location	1p32.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	RP11-296A18.3
Ensembl gene	ENSG00000203356
Ensembl biotype	lncRNA
Entrez	105378716
RNAcentral	URS000014ED6F — lncRNA, 2366 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000366181, ENST00000719633, ENST00000719634, ENST00000719635, ENST00000719636

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000366181 — 2 exons

Exon	Start	End
ENSE00001612466	51195095	51197328
ENSE00001618463	51234965	51235096

Expression profiles

Bgee: expression breadth ubiquitous, 123 present calls, max score 77.58.

Top tissues by expression

123 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	77.58	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	77.47	silver quality
calcaneal tendon	UBERON:0003701	69.75	gold quality
sural nerve	UBERON:0015488	62.90	silver quality
cortical plate	UBERON:0005343	62.49	gold quality
ganglionic eminence	UBERON:0004023	58.24	silver quality
adrenal tissue	UBERON:0018303	57.88	gold quality
ventricular zone	UBERON:0003053	57.16	silver quality
skeletal muscle tissue	UBERON:0001134	56.35	silver quality
blood	UBERON:0000178	54.43	silver quality
monocyte	CL:0000576	54.17	gold quality
bone marrow	UBERON:0002371	53.72	silver quality
hindlimb stylopod muscle	UBERON:0004252	53.14	silver quality
stromal cell of endometrium	CL:0002255	53.12	silver quality
corpus callosum	UBERON:0002336	52.83	gold quality
granulocyte	CL:0000094	52.17	gold quality
muscle of leg	UBERON:0001383	52.02	gold quality
lymph node	UBERON:0000029	50.96	gold quality
gastrocnemius	UBERON:0001388	50.89	gold quality
gall bladder	UBERON:0002110	50.01	gold quality
liver	UBERON:0002107	49.84	silver quality
cerebellum	UBERON:0002037	49.80	silver quality
cerebellar cortex	UBERON:0002129	49.76	silver quality
prefrontal cortex	UBERON:0000451	49.75	silver quality
endometrium	UBERON:0001295	49.75	gold quality
cerebellar hemisphere	UBERON:0002245	49.59	silver quality
right hemisphere of cerebellum	UBERON:0014890	48.53	silver quality
superior frontal gyrus	UBERON:0002661	48.52	gold quality
left ovary	UBERON:0002119	48.37	gold quality
primary visual cortex	UBERON:0002436	48.17	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.40

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.