LINC01563

Summary

LINC01563 (long intergenic non-protein coding RNA 1563, HGNC:51343) is a long non-coding RNA gene on chromosome 17p11.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51343
Approved symbol	LINC01563
Name	long intergenic non-protein coding RNA 1563
Location	17p11.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000236819
Ensembl biotype	lncRNA
Entrez	101060544
RNAcentral	URS0000759F05 — lncRNA, 872 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 13 — 13 lncRNA

ENST00000456235, ENST00000656070, ENST00000659567, ENST00000664341, ENST00000664827, ENST00000664838, ENST00000666441, ENST00000668335, ENST00000671326, ENST00000812095, ENST00000812096, ENST00000812097, ENST00000812098

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000456235 — 2 exons

Exon	Start	End
ENSE00001642745	21075556	21075957
ENSE00001714385	21090268	21090615

Expression profiles

Bgee: expression breadth ubiquitous, 143 present calls, max score 83.20.

FANTOM5 (CAGE): breadth broad, TPM avg 1.1901 / max 278.3399, expressed in 183 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
159892	0.7833	150
159894	0.2361	87
159893	0.1706	79

Top tissues by expression

239 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	83.20	gold quality
gastrocnemius	UBERON:0001388	81.82	gold quality
muscle of leg	UBERON:0001383	81.36	gold quality
ganglionic eminence	UBERON:0004023	79.07	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	76.43	gold quality
anterior cingulate cortex	UBERON:0009835	76.13	gold quality
amygdala	UBERON:0001876	75.40	gold quality
hindlimb stylopod muscle	UBERON:0004252	75.32	gold quality
caudate nucleus	UBERON:0001873	74.99	gold quality
nucleus accumbens	UBERON:0001882	74.88	gold quality
spinal cord	UBERON:0002240	74.82	gold quality
prefrontal cortex	UBERON:0000451	73.71	gold quality
putamen	UBERON:0001874	73.32	gold quality
Brodmann (1909) area 9	UBERON:0013540	72.76	gold quality
right frontal lobe	UBERON:0002810	72.04	gold quality
tendon	UBERON:0000043	71.33	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	71.12	gold quality
tendon of biceps brachii	UBERON:0008188	70.91	gold quality
hypothalamus	UBERON:0001898	70.90	gold quality
neocortex	UBERON:0001950	70.80	gold quality
frontal cortex	UBERON:0001870	70.01	gold quality
ventricular zone	UBERON:0003053	69.71	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	69.63	gold quality
skeletal muscle tissue	UBERON:0001134	69.44	gold quality
upper arm skin	UBERON:0004263	69.29	gold quality
cerebral cortex	UBERON:0000956	69.09	gold quality
substantia nigra	UBERON:0002038	69.01	gold quality
forebrain	UBERON:0001890	68.71	gold quality
cardiac muscle of right atrium	UBERON:0003379	68.09	gold quality
left ventricle myocardium	UBERON:0006566	67.80	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.48

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.