LINC01564

Summary

LINC01564 (long intergenic non-protein coding RNA 1564, HGNC:51361) is a long non-coding RNA gene on chromosome 6p12.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51361
Approved symbol	LINC01564
Name	long intergenic non-protein coding RNA 1564
Location	6p12.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	TCONS_00011314, RAMS11
Ensembl gene	ENSG00000235899
Ensembl biotype	lncRNA
Entrez	101927171
RNAcentral	URS0000109EC7 — lncRNA, 566 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 32 — 32 lncRNA

ENST00000448327, ENST00000659393, ENST00000668029, ENST00000692070, ENST00000697616, ENST00000697617, ENST00000700824, ENST00000701316, ENST00000701539, ENST00000702108, ENST00000702141, ENST00000781696, ENST00000781697, ENST00000781698, ENST00000781699, ENST00000781700, ENST00000781701, ENST00000781702, ENST00000781703, ENST00000781704, ENST00000781705, ENST00000781706, ENST00000781707, ENST00000781708, ENST00000781709, ENST00000781710, ENST00000781711, ENST00000781712, ENST00000781713, ENST00000781714, ENST00000781715, ENST00000781716

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000448327 — 3 exons

Exon	Start	End
ENSE00001605535	53628575	53628691
ENSE00003857709	53631013	53631400
ENSE00004154009	53628126	53628446

Expression profiles

Bgee: expression breadth ubiquitous, 104 present calls, max score 78.00.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1758 / max 33.8328, expressed in 63 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
68261	0.1565	51
68262	0.0127	4
68263	0.0066	2

Top tissues by expression

104 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
right lobe of liver	UBERON:0001114	78.00	gold quality
liver	UBERON:0002107	76.84	gold quality
islet of Langerhans	UBERON:0000006	75.33	gold quality
gall bladder	UBERON:0002110	73.82	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	67.62	gold quality
lower esophagus mucosa	UBERON:0035834	66.96	gold quality
kidney	UBERON:0002113	61.42	gold quality
esophagus mucosa	UBERON:0002469	61.18	gold quality
adult mammalian kidney	UBERON:0000082	61.11	gold quality
skeletal muscle tissue	UBERON:0001134	60.29	gold quality
urinary bladder	UBERON:0001255	59.64	gold quality
cortex of kidney	UBERON:0001225	59.47	gold quality
esophagus	UBERON:0001043	58.75	gold quality
mucosa of transverse colon	UBERON:0004991	56.90	gold quality
monocyte	CL:0000576	55.76	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	55.69	gold quality
blood	UBERON:0000178	55.15	gold quality
prefrontal cortex	UBERON:0000451	55.02	gold quality
duodenum	UBERON:0002114	54.39	gold quality
ectocervix	UBERON:0012249	54.10	gold quality
primary visual cortex	UBERON:0002436	53.99	gold quality
stromal cell of endometrium	CL:0002255	53.42	silver quality
small intestine Peyer’s patch	UBERON:0003454	52.77	gold quality
endometrium	UBERON:0001295	52.73	gold quality
small intestine	UBERON:0002108	52.55	gold quality
lymph node	UBERON:0000029	52.48	gold quality
vagina	UBERON:0000996	52.05	gold quality
fallopian tube	UBERON:0003889	51.71	gold quality
metanephros cortex	UBERON:0010533	51.68	gold quality
prostate gland	UBERON:0002367	50.72	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.60

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.