LINC01565

Summary

LINC01565 (long intergenic non-protein coding RNA 1565, HGNC:17099) is a long non-coding RNA gene on chromosome 3q21.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:17099
Approved symbol	LINC01565
Name	long intergenic non-protein coding RNA 1565
Location	3q21.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	GR6
Ensembl gene	ENSG00000198685
Ensembl biotype	lncRNA
OMIM	618259
Entrez	23434
RNAcentral	URS00007C95BB — lncRNA, 2697 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000356020, ENST00000753242

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000356020 — 3 exons

Exon	Start	End
ENSE00001127823	128572000	128574303
ENSE00001514950	128575266	128575386
ENSE00001514951	128575815	128576086

Expression profiles

Bgee: expression breadth broad, 16 present calls, max score 71.72.

Top tissues by expression

162 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
metanephric glomerulus	UBERON:0004736	71.72	gold quality
endometrium epithelium	UBERON:0004811	69.32	gold quality
colonic epithelium	UBERON:0000397	66.97	silver quality
buccal mucosa cell	CL:0002336	64.60	silver quality
anterior cingulate cortex	UBERON:0009835	60.88	gold quality
nasal cavity epithelium	UBERON:0005384	59.91	gold quality
vena cava	UBERON:0004087	58.08	gold quality
cartilage tissue	UBERON:0002418	58.03	gold quality
bone marrow	UBERON:0002371	57.87	gold quality
endothelial cell	CL:0000115	57.73	gold quality
cerebellar vermis	UBERON:0004720	56.79	gold quality
sperm	CL:0000019	56.44	gold quality
esophagus squamous epithelium	UBERON:0006920	56.24	gold quality
medial globus pallidus	UBERON:0002477	56.13	gold quality
heart right ventricle	UBERON:0002080	56.08	gold quality
cortex of kidney	UBERON:0001225	55.78	gold quality
gingiva	UBERON:0001828	55.75	gold quality
deltoid	UBERON:0001476	55.74	gold quality
globus pallidus	UBERON:0001875	55.46	gold quality
tendon of biceps brachii	UBERON:0008188	55.32	gold quality
parotid gland	UBERON:0001831	55.23	gold quality
cerebellar hemisphere	UBERON:0002245	55.06	gold quality
gingival epithelium	UBERON:0001949	54.98	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	54.49	gold quality
mouth mucosa	UBERON:0003729	54.08	gold quality
saliva-secreting gland	UBERON:0001044	54.04	gold quality
Brodmann (1909) area 23	UBERON:0013554	54.01	gold quality
duodenum	UBERON:0002114	53.97	gold quality
tendon	UBERON:0000043	53.93	gold quality
decidua	UBERON:0002450	53.59	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.96

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.