LINC01569

Summary

LINC01569 (long intergenic non-protein coding RNA 1569, HGNC:51380) is a long non-coding RNA gene on chromosome 16p13.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51380
Approved symbol	LINC01569
Name	long intergenic non-protein coding RNA 1569
Location	16p13.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	TCONS_00024567
Ensembl gene	ENSG00000262468
Ensembl biotype	lncRNA
Entrez	100507501
RNAcentral	URS000000B904 — lncRNA, 2093 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 32 — 32 lncRNA

ENST00000571970, ENST00000573042, ENST00000573268, ENST00000648010, ENST00000648108, ENST00000648147, ENST00000649264, ENST00000650502, ENST00000685215, ENST00000687438, ENST00000687603, ENST00000689983, ENST00000690276, ENST00000701038, ENST00000701646, ENST00000701924, ENST00000732291, ENST00000732292, ENST00000732293, ENST00000732294, ENST00000732295, ENST00000732296, ENST00000732297, ENST00000732298, ENST00000732299, ENST00000732300, ENST00000732301, ENST00000732302, ENST00000732303, ENST00000732304, ENST00000732305, ENST00000732306

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000571970 — 3 exons

Exon	Start	End
ENSE00002638788	4251322	4251864
ENSE00002683456	4246008	4246860
ENSE00003835797	4246989	4247061

Expression profiles

Bgee: expression breadth ubiquitous, 169 present calls, max score 81.12.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 3.0370 / max 30.6171, expressed in 1206 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
156068	3.0370	1206

Top tissues by expression

242 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.12	gold quality
right uterine tube	UBERON:0001302	81.01	gold quality
right lobe of liver	UBERON:0001114	77.98	gold quality
right lobe of thyroid gland	UBERON:0001119	77.91	gold quality
right adrenal gland	UBERON:0001233	77.13	gold quality
right adrenal gland cortex	UBERON:0035827	76.81	gold quality
granulocyte	CL:0000094	76.78	gold quality
thyroid gland	UBERON:0002046	76.69	gold quality
left lobe of thyroid gland	UBERON:0001120	76.66	gold quality
body of pancreas	UBERON:0001150	76.00	gold quality
left adrenal gland	UBERON:0001234	74.88	gold quality
left adrenal gland cortex	UBERON:0035825	74.80	gold quality
metanephros cortex	UBERON:0010533	74.28	gold quality
adrenal cortex	UBERON:0001235	74.09	gold quality
gastrocnemius	UBERON:0001388	73.61	gold quality
adult mammalian kidney	UBERON:0000082	73.53	gold quality
pancreas	UBERON:0001264	73.36	gold quality
muscle of leg	UBERON:0001383	72.84	gold quality
adrenal gland	UBERON:0002369	72.55	gold quality
spleen	UBERON:0002106	72.09	gold quality
small intestine Peyer’s patch	UBERON:0003454	71.89	gold quality
cortex of kidney	UBERON:0001225	71.70	gold quality
mucosa of transverse colon	UBERON:0004991	71.54	gold quality
small intestine	UBERON:0002108	71.08	gold quality
gall bladder	UBERON:0002110	70.91	gold quality
hindlimb stylopod muscle	UBERON:0004252	70.91	gold quality
stromal cell of endometrium	CL:0002255	70.79	gold quality
body of stomach	UBERON:0001161	70.57	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	70.51	gold quality
apex of heart	UBERON:0002098	70.28	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.38

Regulation

Is transcription factor: no

Literature-anchored findings (GeneRIF, showing 1)

• Long-chain noncoding RNA LINC01569 upregulates filamin A-interacting protein 1-like to prevent metastasis of triple-negative breast cancer via sponging miR-300. (PMID:37955081)

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.