LINC01571

Summary

LINC01571 (long intergenic non-protein coding RNA 1571, HGNC:51384) is a long non-coding RNA gene on chromosome 16q12.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51384
Approved symbol	LINC01571
Name	long intergenic non-protein coding RNA 1571
Location	16q12.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	TCONS_00024399
Ensembl gene	ENSG00000260057
Ensembl biotype	lncRNA
Entrez	101927364
RNAcentral	URS000030A8F3 — lncRNA, 437 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 18 — 18 lncRNA

ENST00000563603, ENST00000569993, ENST00000667113, ENST00000830615, ENST00000830616, ENST00000830617, ENST00000830618, ENST00000830619, ENST00000830620, ENST00000830621, ENST00000830622, ENST00000830623, ENST00000830624, ENST00000830625, ENST00000830626, ENST00000830627, ENST00000830628, ENST00000830629

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000563603 — 4 exons

Exon	Start	End
ENSE00002586111	51772376	51772559
ENSE00002623529	51771564	51771672
ENSE00004245278	51755300	51755386
ENSE00004245286	51772656	51773173

Expression profiles

Bgee: expression breadth ubiquitous, 107 present calls, max score 91.77.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0364 / max 10.0192, expressed in 20 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
154048	0.0364	20

Top tissues by expression

107 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	91.77	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	82.65	gold quality
right uterine tube	UBERON:0001302	80.85	gold quality
sural nerve	UBERON:0015488	80.50	gold quality
thyroid gland	UBERON:0002046	77.94	gold quality
left lobe of thyroid gland	UBERON:0001120	77.64	gold quality
right lobe of thyroid gland	UBERON:0001119	75.82	gold quality
bone marrow cell	CL:0002092	70.92	silver quality
fallopian tube	UBERON:0003889	66.86	gold quality
metanephros cortex	UBERON:0010533	66.61	gold quality
kidney	UBERON:0002113	65.18	gold quality
adult mammalian kidney	UBERON:0000082	63.63	gold quality
islet of Langerhans	UBERON:0000006	63.57	gold quality
cortex of kidney	UBERON:0001225	62.21	gold quality
pituitary gland	UBERON:0000007	62.08	gold quality
adenohypophysis	UBERON:0002196	61.75	gold quality
lymph node	UBERON:0000029	59.07	gold quality
endometrium	UBERON:0001295	57.79	gold quality
mucosa of transverse colon	UBERON:0004991	56.71	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	56.63	gold quality
rectum	UBERON:0001052	55.91	gold quality
monocyte	CL:0000576	55.63	gold quality
duodenum	UBERON:0002114	52.57	gold quality
gall bladder	UBERON:0002110	52.42	gold quality
nucleus accumbens	UBERON:0001882	51.68	gold quality
blood	UBERON:0000178	51.24	gold quality
endocervix	UBERON:0000458	51.02	gold quality
stromal cell of endometrium	CL:0002255	50.63	silver quality
liver	UBERON:0002107	50.50	silver quality
right lung	UBERON:0002167	49.92	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	5.81

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.