LINC01582

Summary

LINC01582 (long intergenic non-protein coding RNA 1582, HGNC:51416) is a long non-coding RNA gene on chromosome 15q26.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51416
Approved symbol	LINC01582
Name	long intergenic non-protein coding RNA 1582
Location	15q26.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	TCONS_00023827
Ensembl gene	ENSG00000259611
Ensembl biotype	lncRNA
Entrez	101927332
RNAcentral	URS000075B2EB — lncRNA, 759 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 12 — 12 lncRNA

ENST00000560195, ENST00000561215, ENST00000660065, ENST00000660778, ENST00000661781, ENST00000664520, ENST00000665630, ENST00000665807, ENST00000670234, ENST00000670525, ENST00000671201, ENST00000717123

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000560195 — 4 exons

Exon	Start	End
ENSE00002538523	98103235	98103719
ENSE00002573463	98085622	98085774
ENSE00003860952	98083834	98083900
ENSE00003887630	98082979	98083449

Expression profiles

Bgee: expression breadth broad, 50 present calls, max score 86.73.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1303 / max 29.1304, expressed in 32 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
151724	0.1303	32

Top tissues by expression

50 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	86.73	gold quality
right testis	UBERON:0004534	80.53	gold quality
testis	UBERON:0000473	80.09	gold quality
left testis	UBERON:0004533	79.67	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	77.67	gold quality
multicellular organism	UBERON:0000468	64.00	gold quality
prefrontal cortex	UBERON:0000451	53.01	silver quality
monocyte	CL:0000576	52.57	silver quality
blood	UBERON:0000178	51.28	gold quality
liver	UBERON:0002107	50.77	silver quality
lymph node	UBERON:0000029	49.92	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	48.27	gold quality
pancreas	UBERON:0001264	47.61	silver quality
muscle of leg	UBERON:0001383	46.86	gold quality
gastrocnemius	UBERON:0001388	46.27	gold quality
islet of Langerhans	UBERON:0000006	45.74	silver quality
adrenal gland	UBERON:0002369	45.28	silver quality
tibial nerve	UBERON:0001323	45.20	gold quality
body of pancreas	UBERON:0001150	44.82	silver quality
upper lobe of left lung	UBERON:0008952	43.98	gold quality
left lobe of thyroid gland	UBERON:0001120	43.83	gold quality
right lobe of thyroid gland	UBERON:0001119	43.28	silver quality
body of stomach	UBERON:0001161	43.14	silver quality
right ovary	UBERON:0002118	43.09	gold quality
ovary	UBERON:0000992	42.71	silver quality
subcutaneous adipose tissue	UBERON:0002190	42.50	gold quality
frontal cortex	UBERON:0001870	42.40	silver quality
tibial artery	UBERON:0007610	42.16	silver quality
putamen	UBERON:0001874	41.59	silver quality
amygdala	UBERON:0001876	41.45	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.47

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.