LINC01589

Summary

LINC01589 (long intergenic non-protein coding RNA 1589, HGNC:51520) is a long non-coding RNA gene on chromosome 22q13.31.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51520
Approved symbol	LINC01589
Name	long intergenic non-protein coding RNA 1589
Location	22q13.31
Locus type	RNA, long non-coding
Status	Approved
Aliases	CTA-941F9.9, TCONS_00029353
Ensembl gene	ENSG00000238120
Ensembl biotype	lncRNA
Entrez	100506737
RNAcentral	URS0000812168 — lncRNA, 593 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 24 — 24 lncRNA

ENST00000422971, ENST00000701502, ENST00000793630, ENST00000793631, ENST00000793632, ENST00000793633, ENST00000793634, ENST00000793635, ENST00000793636, ENST00000793637, ENST00000793638, ENST00000793639, ENST00000793640, ENST00000793641, ENST00000793642, ENST00000793643, ENST00000793644, ENST00000793645, ENST00000793646, ENST00000793647, ENST00000793648, ENST00000793649, ENST00000793650, ENST00000793651

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000422971 — 2 exons

Exon	Start	End
ENSE00001773091	45604432	45604758
ENSE00004176716	45605401	45605660

Expression profiles

Bgee: expression breadth ubiquitous, 126 present calls, max score 96.12.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0168 / max 6.3152, expressed in 4 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
194581	0.0168	4

Top tissues by expression

126 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	96.12	gold quality
calcaneal tendon	UBERON:0003701	86.22	gold quality
left testis	UBERON:0004533	76.43	gold quality
endocervix	UBERON:0000458	75.88	gold quality
testis	UBERON:0000473	75.55	gold quality
right testis	UBERON:0004534	74.87	gold quality
uterine cervix	UBERON:0000002	74.44	gold quality
ectocervix	UBERON:0012249	73.78	gold quality
vagina	UBERON:0000996	73.24	gold quality
fallopian tube	UBERON:0003889	73.18	gold quality
gall bladder	UBERON:0002110	72.29	gold quality
mucosa of stomach	UBERON:0001199	71.68	gold quality
cortical plate	UBERON:0005343	71.29	gold quality
body of uterus	UBERON:0009853	71.21	gold quality
left uterine tube	UBERON:0001303	70.81	gold quality
endometrium	UBERON:0001295	70.63	gold quality
stromal cell of endometrium	CL:0002255	69.77	gold quality
myometrium	UBERON:0001296	69.56	gold quality
smooth muscle tissue	UBERON:0001135	68.00	gold quality
ganglionic eminence	UBERON:0004023	67.99	gold quality
right uterine tube	UBERON:0001302	67.56	gold quality
right coronary artery	UBERON:0001625	67.00	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	66.51	gold quality
skeletal muscle tissue	UBERON:0001134	66.30	gold quality
islet of Langerhans	UBERON:0000006	66.28	gold quality
ventricular zone	UBERON:0003053	66.24	gold quality
urinary bladder	UBERON:0001255	65.28	gold quality
fundus of stomach	UBERON:0001160	65.16	gold quality
metanephros cortex	UBERON:0010533	65.05	gold quality
apex of heart	UBERON:0002098	64.80	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.16

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.