LINC01593

Summary

LINC01593 (long intergenic non-protein coding RNA 1593, HGNC:51583) is a long non-coding RNA gene on chromosome 2q12.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51583
Approved symbol	LINC01593
Name	long intergenic non-protein coding RNA 1593
Location	2q12.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	TCONS_00003364
Ensembl gene	ENSG00000231221
Ensembl biotype	lncRNA
Entrez	107178918
RNAcentral	URS00003091F8 — lncRNA, 388 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000424355

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000424355 — 3 exons

Exon	Start	End
ENSE00001592138	108052634	108052755
ENSE00001690355	108049562	108049785
ENSE00001707372	108049200	108049241

Expression profiles

Bgee: expression breadth broad, 73 present calls, max score 85.56.

Top tissues by expression

73 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.56	gold quality
monocyte	CL:0000576	66.84	gold quality
adult mammalian kidney	UBERON:0000082	62.73	gold quality
kidney	UBERON:0002113	61.08	gold quality
duodenum	UBERON:0002114	59.48	gold quality
fundus of stomach	UBERON:0001160	57.35	gold quality
islet of Langerhans	UBERON:0000006	56.34	gold quality
body of stomach	UBERON:0001161	56.32	gold quality
stomach	UBERON:0000945	56.21	gold quality
calcaneal tendon	UBERON:0003701	55.76	gold quality
urinary bladder	UBERON:0001255	53.72	gold quality
left adrenal gland cortex	UBERON:0035825	51.67	gold quality
body of pancreas	UBERON:0001150	51.56	gold quality
blood	UBERON:0000178	51.33	silver quality
metanephros cortex	UBERON:0010533	50.87	gold quality
Brodmann (1909) area 9	UBERON:0013540	50.17	gold quality
endometrium	UBERON:0001295	49.76	gold quality
spleen	UBERON:0002106	49.52	gold quality
fallopian tube	UBERON:0003889	49.32	gold quality
left adrenal gland	UBERON:0001234	49.25	gold quality
heart	UBERON:0000948	48.07	gold quality
ascending aorta	UBERON:0001496	47.87	gold quality
tibial artery	UBERON:0007610	47.81	gold quality
prostate gland	UBERON:0002367	47.39	gold quality
heart left ventricle	UBERON:0002084	46.58	gold quality
esophagus mucosa	UBERON:0002469	46.27	gold quality
lower esophagus muscularis layer	UBERON:0035833	46.21	gold quality
subcutaneous adipose tissue	UBERON:0002190	46.15	gold quality
multicellular organism	UBERON:0000468	46.07	gold quality
rectum	UBERON:0001052	45.96	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.22

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.