LINC01596

Summary

LINC01596 (long intergenic non-protein coding RNA 1596, HGNC:51591) is a long non-coding RNA gene on chromosome 4q35.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51591
Approved symbol	LINC01596
Name	long intergenic non-protein coding RNA 1596
Location	4q35.2
Locus type	RNA, long non-coding
Status	Approved
Aliases	TCONS_00007705
Ensembl gene	ENSG00000250666
Ensembl biotype	lncRNA
Entrez	105377617
RNAcentral	URS00008E39EF — lncRNA, 602 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000503609, ENST00000847532, ENST00000847533

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000503609 — 2 exons

Exon	Start	End
ENSE00004276351	189884660	189885082
ENSE00004276352	189881210	189881897

Expression profiles

Bgee: expression breadth ubiquitous, 104 present calls, max score 90.62.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0146 / max 11.9482, expressed in 7 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
50971	0.0146	7

Top tissues by expression

104 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	90.62	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	89.69	gold quality
left testis	UBERON:0004533	83.66	gold quality
testis	UBERON:0000473	82.78	gold quality
sural nerve	UBERON:0015488	81.86	gold quality
right testis	UBERON:0004534	79.32	gold quality
colonic epithelium	UBERON:0000397	72.41	gold quality
corpus callosum	UBERON:0002336	66.67	gold quality
adrenal tissue	UBERON:0018303	60.95	gold quality
calcaneal tendon	UBERON:0003701	59.73	gold quality
hindlimb stylopod muscle	UBERON:0004252	55.31	gold quality
lung	UBERON:0002048	54.86	gold quality
monocyte	CL:0000576	54.01	gold quality
lymph node	UBERON:0000029	53.45	gold quality
liver	UBERON:0002107	53.37	gold quality
blood	UBERON:0000178	53.20	gold quality
gall bladder	UBERON:0002110	53.16	gold quality
islet of Langerhans	UBERON:0000006	52.75	gold quality
prefrontal cortex	UBERON:0000451	52.36	gold quality
bone marrow	UBERON:0002371	51.86	silver quality
kidney	UBERON:0002113	51.03	gold quality
primary visual cortex	UBERON:0002436	50.02	gold quality
adult mammalian kidney	UBERON:0000082	49.50	gold quality
multicellular organism	UBERON:0000468	49.39	gold quality
muscle of leg	UBERON:0001383	49.15	gold quality
nucleus accumbens	UBERON:0001882	49.08	gold quality
tonsil	UBERON:0002372	48.71	gold quality
right lobe of liver	UBERON:0001114	48.43	silver quality
pancreas	UBERON:0001264	48.10	gold quality
superior frontal gyrus	UBERON:0002661	47.49	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.17

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.