LINC01597

Summary

LINC01597 (long intergenic non-protein coding RNA 1597, HGNC:51594) is a long non-coding RNA gene on chromosome 20q11.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51594
Approved symbol	LINC01597
Name	long intergenic non-protein coding RNA 1597
Location	20q11.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000205611
Ensembl biotype	lncRNA
Entrez	400841
RNAcentral	URS000043331F — lncRNA, 3328 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 26 — 26 lncRNA

ENST00000380888, ENST00000654517, ENST00000655352, ENST00000655971, ENST00000658774, ENST00000830227, ENST00000830228, ENST00000830229, ENST00000830230, ENST00000830231, ENST00000830232, ENST00000830233, ENST00000830234, ENST00000830235, ENST00000830236, ENST00000830237, ENST00000830238, ENST00000830239, ENST00000830240, ENST00000830241, ENST00000830242, ENST00000830243, ENST00000830244, ENST00000830245, ENST00000830246, ENST00000830247

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000380888 — 4 exons

Exon	Start	End
ENSE00001486669	30278906	30282135
ENSE00001605491	30286440	30287472
ENSE00001728363	30288271	30288532
ENSE00003867210	30289118	30289205

Expression profiles

Bgee: expression breadth ubiquitous, 132 present calls, max score 84.83.

Top tissues by expression

132 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	84.83	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.53	silver quality
right uterine tube	UBERON:0001302	73.92	gold quality
fundus of stomach	UBERON:0001160	69.98	gold quality
body of stomach	UBERON:0001161	69.78	gold quality
prefrontal cortex	UBERON:0000451	69.61	gold quality
sural nerve	UBERON:0015488	69.39	silver quality
nucleus accumbens	UBERON:0001882	69.11	gold quality
metanephros cortex	UBERON:0010533	68.93	gold quality
cortical plate	UBERON:0005343	68.86	gold quality
mucosa of transverse colon	UBERON:0004991	68.83	gold quality
ventricular zone	UBERON:0003053	68.71	gold quality
frontal cortex	UBERON:0001870	68.53	gold quality
adenohypophysis	UBERON:0002196	68.51	gold quality
duodenum	UBERON:0002114	68.49	gold quality
stomach	UBERON:0000945	68.33	gold quality
Brodmann (1909) area 9	UBERON:0013540	68.29	gold quality
caudate nucleus	UBERON:0001873	68.09	gold quality
putamen	UBERON:0001874	68.05	gold quality
cortex of kidney	UBERON:0001225	67.98	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	67.67	gold quality
cerebral cortex	UBERON:0000956	67.63	gold quality
anterior cingulate cortex	UBERON:0009835	67.19	gold quality
bone marrow cell	CL:0002092	67.08	silver quality
right frontal lobe	UBERON:0002810	67.06	gold quality
adult mammalian kidney	UBERON:0000082	66.94	gold quality
fallopian tube	UBERON:0003889	66.77	gold quality
ganglionic eminence	UBERON:0004023	66.73	gold quality
brain	UBERON:0000955	66.66	gold quality
kidney	UBERON:0002113	66.54	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.42

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.