LINC01600

Summary

LINC01600 (long intergenic non-protein coding RNA 1600, HGNC:21600) is a long non-coding RNA gene on chromosome 6p25.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:21600
Approved symbol	LINC01600
Name	long intergenic non-protein coding RNA 1600
Location	6p25.2
Locus type	RNA, long non-coding
Status	Approved
Aliases	FLJ31934, bA145H9.2
Ensembl gene	ENSG00000164385
Ensembl biotype	lncRNA
Entrez	154386
RNAcentral	URS00007D352E — lncRNA, 2434 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 11 — 11 lncRNA

ENST00000624527, ENST00000653895, ENST00000666762, ENST00000670876, ENST00000692706, ENST00000840975, ENST00000840976, ENST00000840977, ENST00000840978, ENST00000840979, ENST00000840980

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000624527 — 3 exons

Exon	Start	End
ENSE00001083952	2621913	2624119
ENSE00001378106	2633605	2633792
ENSE00003866229	2634565	2634619

Expression profiles

Bgee: expression breadth ubiquitous, 147 present calls, max score 82.47.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2600 / max 10.2485, expressed in 139 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
71362	0.2600	139

Top tissues by expression

234 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.47	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	69.49	gold quality
sural nerve	UBERON:0015488	66.58	gold quality
bone marrow cell	CL:0002092	66.52	silver quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	66.02	gold quality
ventricular zone	UBERON:0003053	65.43	gold quality
descending thoracic aorta	UBERON:0002345	63.60	gold quality
cortical plate	UBERON:0005343	62.84	gold quality
ascending aorta	UBERON:0001496	62.48	gold quality
thoracic aorta	UBERON:0001515	62.40	gold quality
hindlimb stylopod muscle	UBERON:0004252	62.14	gold quality
colonic epithelium	UBERON:0000397	61.48	silver quality
aorta	UBERON:0000947	61.24	gold quality
right coronary artery	UBERON:0001625	60.84	gold quality
biceps brachii	UBERON:0001507	60.74	gold quality
popliteal artery	UBERON:0002250	60.44	gold quality
tibial artery	UBERON:0007610	60.37	gold quality
ganglionic eminence	UBERON:0004023	60.24	gold quality
left coronary artery	UBERON:0001626	58.53	gold quality
coronary artery	UBERON:0001621	58.41	gold quality
calcaneal tendon	UBERON:0003701	58.35	gold quality
stromal cell of endometrium	CL:0002255	57.55	gold quality
tendon	UBERON:0000043	57.54	gold quality
parotid gland	UBERON:0001831	57.16	gold quality
tendon of biceps brachii	UBERON:0008188	56.01	gold quality
muscle of leg	UBERON:0001383	55.83	gold quality
saliva-secreting gland	UBERON:0001044	55.61	gold quality
subthalamic nucleus	UBERON:0001906	55.05	gold quality
cardia of stomach	UBERON:0001162	54.85	gold quality
dorsal plus ventral thalamus	UBERON:0001897	54.68	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.62

Regulation

Is transcription factor: no

Literature-anchored findings (GeneRIF, showing 2)

• RBP EIF2S2 Promotes Tumorigenesis and Progression by Regulating MYC-Mediated Inhibition via FHIT-Related Enhancers. (PMID:32059763)
• Prognostic value of CASC15 and LINC01600 as competitive endogenous RNAs in lung adenocarcinoma: An observational study. (PMID:37960753)

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.